RNA id: AMCG00008023



Basic Information


Item Value
RNA id AMCG00008023
length 1203
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00008023
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39843224 ~ 39848246 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAGCTGGGGCTCCAAGGGCAAGTCCgacgaggaggatgaggaggacaGCGAAGAGGAAGGGTGCGGGCAGAAGGGGCCGTGCACGGAGGACGAGGAAGAGATTGATCTCCAGACCGTGGacgaggaggagaaggagatcTCTGGTGGCACTGTCGGGCCCGAGGGAGTGCCCGCAGCCCTGGATGTGTGCTCGCTGGCGAGGCTGGGGCAAGTGTCGAAATCCGAGGGCAAAGCAGAACCAGGGTGTCTGAAAGAGGACGCGCAGTCCCAGAAGCCCAAAATCTGGTCCCTGGCCGAGACGGCAACCTCGGACAGCGCGCACAGAGCTCCGAGCAAGAGCGCCATCCAGCACACCGGCAGCGCGGACATCGGGGCGCTGTGGGCGGACTGGGCTTTGAGAAACGGACAGTATTTCCCCATGTATTACCCACAGTGTATCCTGCAGCAGAGCGAGTTGAACTGCCACATGCCTGCGCCGCACACTGGATTTGCAGATTTCTTCCTTGGGAAAAACCTCAGCATGCCGCCTGGATATCAGACTTTGGTTGTGGGGTGCCCGACAGGGGTCCCCCCGGCGCCTCACCTCTCTGCTGTTGCCGGGCTGCCCGTGTCTTATCCCGGGTTGCAGGAGTACAGCTTCATCCCGTATCCTCACCTGAGACACGCCGCACACATGAAGGAGAACCGGATGAGCTGGGGCTCCAAGGGCAAGTCCgacgaggaggatgaggaggacgaggaggataGTGATGAAGATGAAACCGGACAGAAGGGACATCACTCAGATGACGAGGATGAGATTGATGCCCACACTATGGACGAGGAGAACAAACAGATCTCTGATGGGCTTCACGGTTCCGAGGATTTCAGGACTTGCGACAGACTTACCCAGACAGGATTGAAGCTGGGCACGCAGAGCCCTGTTTGCCAGTCTGAAGAGGATTACAGGAGACCCGCGCAGTGCATCTTACCCCCAGACACTGCTGGTGTGCCCGCAGTGCCCAAAGATATAGCGCAACCGCAGAAACCTAAAATCTGGTCCCTCGCTGAAACGGCAACGTCCGTTAGACGAACAGACCCAACTGACAGGACCTCTCAGATCAGTACTCAAGATACTGGCAAATTGTGGAAAGATCTGGTTCTCAAGAACACCCACCAGTTCCCCGTGTATTACCCAGTTCACACCAGCAGACTCCTCTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU34902 lncRNA upstream 238396 39604612 ~ 39604828 (+) True G27881
TU34870 lncRNA upstream 250813 39510411 ~ 39592411 (+) False AMCG00008007
TU34873 lncRNA upstream 250813 39580779 ~ 39592411 (+) True AMCG00008007
TU34891 lncRNA upstream 301307 39540382 ~ 39541917 (+) False AMCG00008010
TU34781 lncRNA upstream 552003 39290968 ~ 39291221 (+) True G27788
TU35006 lncRNA downstream 109741 39957987 ~ 40003700 (+) True G27960
TU35021 lncRNA downstream 203644 40051890 ~ 40060205 (+) True G27973
TU35105 lncRNA downstream 429168 40277414 ~ 40277687 (+) True G28032
TU35194 lncRNA downstream 815726 40663972 ~ 40721691 (+) False AMCG00008051
TU35229 lncRNA downstream 903229 40751475 ~ 40755976 (+) True G28140
AMCG00008020 mRNA upstream 8272 39817027 ~ 39834952 (+) True AMCG00008020
AMCG00008021 mRNA upstream 34195 39797335 ~ 39809029 (+) True AMCG00008021
AMCG00008022 mRNA upstream 52560 39784824 ~ 39790664 (+) True AMCG00008022
AMCG00008007 mRNA upstream 261942 39571305 ~ 39581282 (+) False AMCG00008007
AMCG00008011 mRNA upstream 272292 39568443 ~ 39570932 (+) True AMCG00008011
AMCG00008024 mRNA downstream 124317 39972563 ~ 39975851 (+) True AMCG00008024
AMCG00008027 mRNA downstream 214475 40062721 ~ 40074110 (+) True AMCG00008027
AMCG00008030 mRNA downstream 226980 40075226 ~ 40076278 (+) True AMCG00008030
AMCG00008031 mRNA downstream 252940 40101186 ~ 40114340 (+) True AMCG00008031
AMCG00008035 mRNA downstream 323451 40171697 ~ 40172836 (+) True AMCG00008035
TU34945 other upstream 8288 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 338847 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 1134309 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 1406629 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 1430295 38355929 ~ 38412929 (+) False AMCG00007957
TU35023 other downstream 208386 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 393066 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 2144613 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 3257467 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 3298527 43146773 ~ 43149043 (+) False AMCG00008120

Expression Profile