RNA id: AMCG00008024


Basic Information

Item Value
RNA id AMCG00008024
length 2219
RNA type mRNA
GC content 0.46
exon number 3
gene id AMCG00008024
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39972563 ~ 39975851 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCAGGCTGAGCATCACCTGGATGGTGCTGGAATATTATGATCGACAGCACCAAGTCTAGCTTCCTGTTCTGCCTGGGAATCTGTGTTCTGATCTGCACTGCCATTTACCTGAAGGCCAAGGTGTCGAACTCCCCAGGAGTACAGCAGGGCAAAGTGAATTGTCAGAAATTCCCCCAGCCATGCTCAGTGTTCCTAACTGGCACAGAAGGCACAGACTGGCAGCAGAAGCCCTGTTTGGAGGGTAGCAATGCAGAGGCCTATTTTCTGTGGGGGGAGTTTAACTGCTCACGGATGGTGGAGGACTTTCATTTCATCACCAGCCCCCTGAGCCCAGAGGAGGAGCAGTACCCTCTGGCCTTCATCATCACCATCCACAAGGAGATGGAGATGTTCGTGCGGCTGCTCAGGGCTGTCTATGCCCCTCAGAATGTGTACTGCATCCACGTGGACGCCAAGTCTCCTGAGGACTACAAGACAGCTGTCCAACGCTTGGCCAGCTGTTTCCCCAATGTCTTTGTGACCTCCAAGTTGGAGACAGTGGCCTACGGTGGCTTTTCCAGGCTCCAAGCTGATATCAACTGCATGAGAGACCTGGTGAAGTTCCCCACGCCATGGAGGAAAGTCATCAACCTCTGCGGCCAGGATTTCCCCACCATGAGCAATCTGGAGCTGGTGCGATACTTGCAGAGCAAGGAGTGGAGGGAGAAGAACATGACGCCAGGGATCAAGCAGCCCACCTCCATGCAGTACAGGACACAGCTGAAGTACAGAGAGGTCAAAGGCTCCCACATTGCGAAGTCAAGGGAAAAGAAAGGGGCGCCGCCACACAACCTGGAAATCTATTTCGGCACCGCATACTACTCTCTGACCAGGCCGTTTGTGAAGTTTGTGATGCAGAGTGAAGTTGCCAGGGACCTGCTGGAATGGTCAAAAGACACCTACAGCCCAGATGAACACTACTGGGTAACCCTCAACCATTTATCAGATGCTCCAGGAAGCAACCCCAACGGAGGCTGGGAGGGATCTATCCGTGCAATAAAATGGAAAGACCAAGAAGGGAAATTGCACGGGGGATGTAAAGGCCACTACGTCCGTGACATCTGCGTCTATGGGCCAGAGGACCTGCAGTGGATCATTGACAAAAACAGCATGTTTGCCAACAAGTTCGAGCTGAAGAGCAACCCCCAGGCGGTGCACTGTCTGGAGCAGTGGCACCGCCACAAAGTCCTGAGCCAGACAGCGATACCGATCCAACCGTCCTGGCTGTTCCAGAATCACACCAGGCTGCTCAATGCCTCCAGAGCACCCTAACAAGGGAGGGAAGTTTAGGCCTTCTTCCACAGCTTTTGGAATGGAGAAGTAAGAGTAAAGCTCTCGCTGTTTGACCGCgaggtgctgctgctgccaccgCCAGAGGAACAATTTTCCCCATGTCACTCAAGAATTCCTCGTCACAGTAAGACAAAGGAGAGTATTGAGATTTCCCAGAGACAAATGACATACTGCTATCACACGGATGGGCCACAGATACAAAACAAGATAATCATCCAAGTGCTTAGCTTTTATGTGCCCCAATgacaagaaggaaaaaagattGAACATAGAGTtaaatagataaacagatacattACATAGGTATATTagataaagtatatataaatattaagttCAAAGAAATGAACTATAAAAACTGCATTAGTTTCCAGAaggggattttattttccacccTTCGTTGAAAATTATGTCATTAATTATTCCATGTTCAGTCGAATAGCTTATTAAAGTGtagttatttatcaattatcttCCTAGCGGAACACTGATTAAGTCACAGAGATgtaagattaatatatatactgtatataacttttaacagatttttaaaaacttcacaaaaatctaaaactcATAATTCCAAAATTCGCAGCAAGAGCAGCAATTATTCTCAAAAGAGGGATGGCAATAATGGGTTCTAAGACTCAGCTGCATCAGAAGGGTTTCCTTAGGTATTACTGCACGATTGTATAATGACGGGGAGACAAAATTAGATTACCACCGCGAGACACAAATGAAGGACTGGTCAATGTTCTAATCTGTTATACAGAGTAGACTAACATATACCAAGACTATTTTAGATACAGCACAGTCCTGTGTAGAAGTTAGATTGCAGatgatacatttgaaaaacaacatttcactGTCACAATTTGTTTCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34902 lncRNA upstream 367735 39604612 ~ 39604828 (+) True G27881
TU34870 lncRNA upstream 380152 39510411 ~ 39592411 (+) False AMCG00008007
TU34873 lncRNA upstream 380152 39580779 ~ 39592411 (+) True AMCG00008007
TU34891 lncRNA upstream 430646 39540382 ~ 39541917 (+) False AMCG00008010
TU34781 lncRNA upstream 681342 39290968 ~ 39291221 (+) True G27788
TU35021 lncRNA downstream 76039 40051890 ~ 40060205 (+) True G27973
TU35105 lncRNA downstream 301563 40277414 ~ 40277687 (+) True G28032
TU35194 lncRNA downstream 688121 40663972 ~ 40721691 (+) False AMCG00008051
TU35229 lncRNA downstream 775624 40751475 ~ 40755976 (+) True G28140
TU35231 lncRNA downstream 782847 40758698 ~ 40759010 (+) True G28141
AMCG00008023 mRNA upstream 124317 39843224 ~ 39848246 (+) True AMCG00008023
AMCG00008020 mRNA upstream 137611 39817027 ~ 39834952 (+) True AMCG00008020
AMCG00008021 mRNA upstream 163534 39797335 ~ 39809029 (+) True AMCG00008021
AMCG00008022 mRNA upstream 181899 39784824 ~ 39790664 (+) True AMCG00008022
AMCG00008007 mRNA upstream 391281 39571305 ~ 39581282 (+) False AMCG00008007
AMCG00008027 mRNA downstream 86870 40062721 ~ 40074110 (+) True AMCG00008027
AMCG00008030 mRNA downstream 99375 40075226 ~ 40076278 (+) True AMCG00008030
AMCG00008031 mRNA downstream 125335 40101186 ~ 40114340 (+) True AMCG00008031
AMCG00008035 mRNA downstream 195846 40171697 ~ 40172836 (+) True AMCG00008035
AMCG00008037 mRNA downstream 232286 40208137 ~ 40213983 (+) True AMCG00008037
TU34945 other upstream 137627 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 468186 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 1263648 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 1535968 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 1559634 38355929 ~ 38412929 (+) False AMCG00007957
TU35023 other downstream 80781 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 265461 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 2017008 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 3129862 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 3170922 43146773 ~ 43149043 (+) False AMCG00008120

Expression Profile