RNA id: AMCG00008026


Basic Information

Item Value
RNA id AMCG00008026
length 507
RNA type mRNA
GC content 0.56
exon number 5
gene id AMCG00008026
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39981612 ~ 39984433 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGTGTGACGGAGGCACGATCCCCAAAAGGCACGAACTCGTGAAAGGACCCAAGAAAGTGGAGAAGGTTGACAAAAGCGCAGAACTGGTTGCGCGCTGGAACTATTGCGCCCTGACGCAGGAGAAGCTCAGGCGCCCCATAGTGTCCTGTGATCTGGGCAGACTATACAATAAAGATGCCATTATCGAGTACCTGTTGGATAAATCCGCCGAGAGACCCAACATAGAGGTGGCGGTCCATATTCGCGCCATCAAGGATGTGAAGGAGCTGAACCTGACTGACAACCCAGCCTGGGAGGGGGACAGAACGAACACCAAGGGCGGCCGCTATGAGGAGCTGCACCGCGCCCACTTCATCTGCCCCGTGGTGGGCCTGGAGATGAATGGCAAACACAAgttctGCTATCTGCAGACCTGTGGCTGTGTGTTCTCTGAGCGCGCCCTGCGGGAAGTCAAGACTGAGATCTGCCACAAGGTAGGAGCAGCAGTGGTTGCTCTGGGTTAA

Function

GO: NA

KEGG:

id description
K25186 RTF2; replication termination factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34987 lncRNA downstream 134568 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA downstream 134568 39842331 ~ 39847044 (-) False G27949
TU34962 lncRNA downstream 190128 39790546 ~ 39791484 (-) True G27927
TU34927 lncRNA downstream 217195 39763930 ~ 39764417 (-) True G27904
TU34831 lncRNA downstream 525754 39455040 ~ 39455858 (-) True G27833
TU35107 lncRNA upstream 283839 40268272 ~ 40273788 (-) True AMCG00008042
TU35109 lncRNA upstream 292730 40277163 ~ 40277647 (-) True G28036
TU35108 lncRNA upstream 294294 40278727 ~ 40288574 (-) False AMCG00008042
TU35176 lncRNA upstream 643344 40627777 ~ 40632764 (-) True G28095
TU35192 lncRNA upstream 675448 40659881 ~ 40663760 (-) True G28110
AMCG00008025 mRNA downstream 36260 39929531 ~ 39945352 (-) True AMCG00008025
AMCG00008019 mRNA downstream 353510 39592332 ~ 39628102 (-) True AMCG00008019
AMCG00008016 mRNA downstream 415058 39557576 ~ 39566554 (-) True AMCG00008016
AMCG00008014 mRNA downstream 439666 39528389 ~ 39541946 (-) True AMCG00008014
AMCG00008017 mRNA downstream 456286 39518444 ~ 39525326 (-) True AMCG00008017
AMCG00008029 mRNA upstream 2495 39986928 ~ 40008602 (-) True AMCG00008029
AMCG00008028 mRNA upstream 66596 40051029 ~ 40061973 (-) True AMCG00008028
AMCG00008032 mRNA upstream 93075 40077508 ~ 40091201 (-) True AMCG00008032
AMCG00008033 mRNA upstream 108290 40092723 ~ 40101200 (-) True AMCG00008033
AMCG00008034 mRNA upstream 148110 40132543 ~ 40137452 (-) True AMCG00008034
TU34865 other downstream 477020 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 889857 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 925933 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 932015 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 1817070 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 1031726 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 1215056 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 1862500 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 2776571 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 4433441 44417874 ~ 44418196 (-) True G28970

Expression Profile