RNA id: AMCG00008027


Basic Information

Item Value
RNA id AMCG00008027
length 4686
RNA type mRNA
GC content 0.45
exon number 5
gene id AMCG00008027
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40062721 ~ 40074110 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTATGCGAGGTTCAGAGAGGCAGACCCCAGTGCCCTGCCAGCCCAGGTTGTCCTCTGTGCTGCTGACTCAGCCAGTCCCGCCCCCTGCTCACTTGAGCCCCAATATCCCTTCCTCCATCACTCATGTTATCACCTGCCACAGAGGAATGTGCCGTAACCTCCACCAGGGCACCAAGACTCCAGTGATTATCAGTGCCTCTAAACTGCTACTAAACTGTGAAAACTGCAATATCTTCCCAACTACAGCCCAGCAGCCCTCCAAAACAGAGCTGCAGAACACAGTGCAGTCCAGACTGTCTGCGAGGGCCAGCTGGGGACAACTTGCGCAACACGAACACGTCAGCCTGAGAAGTGATGGTCTTGACATTTTAGTTGTCCCAGAAGTGCGCCTGGAGCGGCTTCGGAGTCCGATCGCGGGTCACAGTGTGCGCGGCCTCGTGCACAGTTCAGTCTTCTACAGCATCACATGAGGGTCTCGGTTATGATGATGACAGAACAGAAACACACCAGAAAACCTCTTTGTGCACATAAAAAATATGGAGTAAATCACACAAGAACCCAGGTCATTTTACGCTGGTATTTTACTACAGGCAGCAGAGGAGAGGGCCAGGGTTGGCAGCACAGTCAATAATGAGGTGCAGAAGACTGCTGACAGGGACAGCTCAGGGAGAGCCGGTAAACACATTTCTAGAAGTGCTGCCAACTCACAGCAGGAAGTTCAATTACTgccactttatttttctttgtctttcttcttttcactgatttaaaaattatCCCCACAAACTAAATAATCTTCCATTATTCACCAAGACACCCAGGTGAAATGAAGGGTTTtcattatacatataaaaggCCACTCTTGATCCAATCACTTGGCAGtttatttcaagaaaataagtaattctGTGCAGCTCGACAGGTGATTAAGGTTAATTTGTTAATGTGCTTTGCTGAATCTGCAGAGTTAAACTCATGCAGTTAAagttaattactattattatatttcttagcagacgatCTTATCTAGAGCGACTTACAATTCTTACAATTTATCACATTATTTGGATGTACAATTATCCATTTTATTAAAGTGTCCTCCACCtggaacccacaaccctccgtTCAGGAACTCAGTGCCCTGAcggctactccacactgctgcccagaataattattcatatttacactATGGCTTGTAAAACAGGAATTTTAAAGATCTTGTTCACAGACTTTGAAAAGATGACCAGCTCCAGGAGGGTGTGTTATAGGGGGAGTCCATCACAGCTGCACCAAAGCCAAACACACCCGTGAGATCTGCTGAGCCTGACCATGAAAGGTCTACAGGGTTTAAAGTTATGTTCCTGTATTATGTCCATAGTCACATTTCTGTGTGATTCAAGCTATCGTTCACCCCCCAGGGCCGAGAGAAACCCCTGCGTGCCTAAGATGCTGCTGAGGTCTTCTTGCCTGGATCATGGAAAGATGTTCTCAACCTCAAAAGTCAAGGAACATCCCAAAAGAGTTTAATAGGCAACATTTTGGTAATGACAAACTGTGGTTATTCTGTGTGTGCAGGAGCCACAGACCAGCGTCCGTGTTGACGATACTCATTAAACAAgaatggaatttattttccatgaagGTAAACAACCCTTGATTTTAATTGCCAAGTTTATCCTTGGTGCACCAGGTCATTAAATCTCTGTGACGAACTGGTATCTCCAGAATTTTTAATAGGTGTGATTCCCTAGGCAGGTTGTTTAACAGCTAGTGTTGCCGATTAACTTACTTAAAGAGCAAAATGTCTTAAGGTGGATGGCCACTGGCAGCAAATTAGAGGAATGACAGACAATCCCTACACACGAGCCCTGACTGCCTGCCCTTCCCGTGATGTCCACTGCCAAGGCAACTCAGcagcaacacaatacaaatttaaattatcATATTGCTGGGCCATCCTTCTCCTATAagtttttagctttttttccctctctctataGTAAGAAAGAGCTCAAGGTTGACCAGCCTGCTTCCCTTAAATCCCTGTAGCTTTACCTGGGTGACTGCCAGCCCCCTGAAAGGAGCCAAGAAACAAACATGGAGTAAGCACGAACTGGAGGACTTCAATGGCCTCCCTGGAGAAAAACCTCAGGACCACTTTATTCTTAGACATTCCCAAGAAAAACAGCTGAGCCCCGGAGGGCCGTCCTTCCAGACGTTCCCAGCTAAATAAGGAAATAGCCAGGCGGTGGCTCTTGCCTGCTGCTCCCAGCCAACTGCTGCACGCCCATTCACCCAGGCCAGAGCTGATCTGAAGTGGATCTGCAGTGTTTCACAGAGAAGGGGCAAGGACGATTTCCCTTCACATGCAGCCTCCCAGTTCCCTTATCCAAGGTGGCAGCTTGATATTGTTGCTAATCCAAACACCACCCATGTGTCCCCACTTCTCTCAAACCCTGTTTTCCAAATCTCTCTAGTATCTTGTCTTGGCATAGCATGAGCATTCAAGCTAGAATTACTAGAATGACTAGGGAATAACAGACAGaagacattattatttcatgtgTATACAAGTAcagatatatgtatgtatgaatgtatgtatttggttGATACATTAATCCAAGTTCATTTACAAGGTTTGTATACATAAtacagagaacaaaacaaacaatagaaaACAATAGCAGAATACATTATAATGTTGAACAATTTAAATGAGCGGTTTTGCATTTAAGGtatggaagagaagaaaaaacatatcaaCAGTACTCCAACTGAAAATAGTCCTACCATGAAAACAGTGCAGTTCCACAAGGCTGGTGGTGGGAGTAATGGGCTGTAGCAgaatgacctttgacctcccaGAGTCCATCAAGAATGGATCCCTATGTGCAAGAAATAGCTCACAGTGCCATCTGCAGTCTTACACActacataacacacacacatacacaaccaGGCTTCATGTAAAGCAGTGGtttccaaccctggtcctggggacccagtGTCCTACAAGATTGTTGTTCCAGCTGAGATCTCAATTCCTAATGATTggcctaatcagagcttattaaTCATTTGAAACCATGAGAGGTGTCACATTAAATATTGAGGTATTTTAGGCACCCGTATTCTCCAACGTTTTGTAAgtttaaccattttaaaagttgaaTTAAGGGAATTATATGTTCAATTAAGatttcaattagttaattgacagtgcagttggatcaaaaaccagcagcaCAATGGGTCCACGGGACCAGGGTTAGTAACCACTGATGTATAAACACTATCTGCATGTGAAACaagtatttacttattttatttagtatggTGTTTGCTTTGATCACGGTCTTTTAGTAAAGCACACACTTCATTGAACAAGCGCACAAGCAGTGTAATATGACAATGCATATATTCTCTAGCGAGGGTGGGGGACACAGTAGAGGCGAATACAACCAGTACAGAAGCTTAAGCTGCCCACAGACGACACGGGAGACAATTGCATGCCATTGCATTCTGTATCTGCAGTGTGCCTCCCTCTGTCGGAAGAGAGTGTGTAGTGCCCTGCACAAAGACGTGCCACTTCTATTCGCCCAGTGGGCACCACGTAGGGGAGATTGCTGTGGTATGCTTTGAGTTTCTTGATCTAATTGTTAGGTCGAGTTGTTCCTTTGTTTTGCGCTTCTCCAAATCCGCGCGTCCCTCCACCTCCCACTCAGTGGCGCTTGTCCACTGCTGCAGCTGCAAAGTGCAATCGGATAGACCCTGAGAGAGCATGGGCTGTGAGGGCATCAAGCAAGCTTTGTACATTTCTGTGTGGTACAGGAGTCGGTGCACAGAAAGCAGTTTGACTGAAAAGGTTATGAGGATGCACTGCTGCTGCCATCCCGCTGCGCAACCCAACAGCATTGTACTTACACCATGATTAAGACCCCCGACTGAAAAGACAAAAGAGGGGGTCAGAAACTGAGTTAACGAGATAATCAGAGGATAATGACACGTCTGTTGATTATAGCTGATTAGACCTCCTCCTAGTCCTGGCGAGATGTGGTCCCTGTGAGGCTGCTGGCACCCAGGGATGCGGGCCCGAGTGGAAACGCGCAAGAGACGTGGGAATGTGTTACAAATCAACAGGGAAGCACCGAAATGAGACCTGACTTTTGGAGCCTCCCAATTTCGGAGACCGGACTATAGATACGGTATTTTTTCTATTATGTTCTGTCCCTCTTTCCAACTACATTTTCTGGGGGGAATATCTGTTTTAGTATCTGTCTCTAACTTTTACATtagctttcttttcttgtttgctttgctAAGGATAGGACTTGTATCGTCTTGTATCGCcgtgttttaataaaatgtagttttgcaATTTAGTGTTTTAGATGAGCTAGTAAATCTTGCTTTTTTTCCCTGCCGTGCACAGTTCGTGCCCTGCGCGCTGTGATTCCTGGTCAGGTATAATAAACCAAATGATTATTGAACTGTATCTTGTCCGAGGTGCGTGTACTGGGATCCCAGGCTGAATTTGCATGGGTGCAGTTTGATGGTGAGGGTGAGggccccctcctccctccccacaGTAATGCATTTGGGATGGTGTAGTCCAGCGGTTCCAGCCGGTCCTGGAGCCCCCCTGCACTGCTGGTTTTCTTTCCAACTGAACTCtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35021 lncRNA upstream 2516 40051890 ~ 40060205 (+) True G27973
TU35006 lncRNA upstream 59021 39957987 ~ 40003700 (+) True G27960
TU34902 lncRNA upstream 457893 39604612 ~ 39604828 (+) True G27881
TU34870 lncRNA upstream 470310 39510411 ~ 39592411 (+) False AMCG00008007
TU34873 lncRNA upstream 470310 39580779 ~ 39592411 (+) True AMCG00008007
TU35105 lncRNA downstream 203304 40277414 ~ 40277687 (+) True G28032
TU35194 lncRNA downstream 589862 40663972 ~ 40721691 (+) False AMCG00008051
TU35229 lncRNA downstream 677365 40751475 ~ 40755976 (+) True G28140
TU35231 lncRNA downstream 684588 40758698 ~ 40759010 (+) True G28141
TU35233 lncRNA downstream 687156 40761266 ~ 40761633 (+) True G28143
AMCG00008024 mRNA upstream 86870 39972563 ~ 39975851 (+) True AMCG00008024
AMCG00008023 mRNA upstream 214475 39843224 ~ 39848246 (+) True AMCG00008023
AMCG00008020 mRNA upstream 227769 39817027 ~ 39834952 (+) True AMCG00008020
AMCG00008021 mRNA upstream 253692 39797335 ~ 39809029 (+) True AMCG00008021
AMCG00008022 mRNA upstream 272057 39784824 ~ 39790664 (+) True AMCG00008022
AMCG00008030 mRNA downstream 1116 40075226 ~ 40076278 (+) True AMCG00008030
AMCG00008031 mRNA downstream 27076 40101186 ~ 40114340 (+) True AMCG00008031
AMCG00008035 mRNA downstream 97587 40171697 ~ 40172836 (+) True AMCG00008035
AMCG00008037 mRNA downstream 134027 40208137 ~ 40213983 (+) True AMCG00008037
AMCG00008038 mRNA downstream 141805 40215915 ~ 40237710 (+) True AMCG00008038
TU35023 other upstream 3335 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 227785 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 558344 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 1353806 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 1626126 38432045 ~ 38436595 (+) True G27551
TU35066 other downstream 167202 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 1918749 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 3031603 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 3072663 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 3218486 43292596 ~ 43301422 (+) False AMCG00008132

Expression Profile