RNA id: AMCG00008028


Basic Information

Item Value
RNA id AMCG00008028
length 3547
RNA type mRNA
GC content 0.48
exon number 10
gene id AMCG00008028
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40051029 ~ 40061973 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAGCTGTTGTGCAAGGCATGCTCTCTGCTCCACACAGCCTCCTTTTACGGAGTGCGGATCTTGAGGAGTCGGAtgagCCGTTCCCCACAGACGGCTGTGTTCGTGTGCCTGGGCCTCTCGGTGCAGGCCGGGTGTGTTGTGTCCGCATCAACCTTGTAGATGCCCAGCTGTGTCCCTGTGCCTACACTAACAACGTGTTTCTCTTCTTCCCTTTGCAGCCGACTGATGCCCAGAGCGATGCTCGGTCCTACCTCAGTGAGGAGATGGTTGCCGAGTTCAAGGCCGCCTTCGACATGTTTGACACTGACGGTGGCGGTGACATCAGCACCAAGGAGTTGGGCACCGTCATGAGGATGCTGGGGCAGAACCCCACCAGAGAGGAGCTGGACGCCATCATTGAGGAGGTAGATGAGGACGAGGATCAGGCCGGAAAGAGCGAGGAAGAGTTGGCAGAGTTCTTCCGCGTCTTTGACAGGAATGGTGACGGCTACATTGACCGCGAGGAGTTCGGTGAAATCCTGCGCTCTGCTGGGGAGCCCGTGACAGATGAGGAGGTGGATGAGCTGATGGCCGAGGGAGACAAAAACAATGACGGCAAGATTGACTTTGATGAGTGGCTGAAGCTGATGGAGAATGTGCAGTAAGAGACCAACATTCCTCGACAACCCTTGTGTGTGACAGTCTGTTTTTCCAAGAGGTTTTTTAACTCTTTGACGCTGCTCCCGTAGAGACAATATGCCAGCGCAACCTTGTTTCGCTTCagaatcagaaaaaaaatgaaatcgaGAGAAAGAACGAACGACAGAAAGAAACCGAGAAGGGAGAACTGATTGCCACAACACCCCCCTCTACTCCCCTCCTccccaacccccctccccatcccccCATCACTGCCACAACAAGACTCTGGGAAATCTTTGTCTACTCCAACCTTCAATTGAAAGCACTCTCTTTTGGTACCTTCTTCTTGTACTGGTCAGGAAAGCTATCTGCCCCATCCCAGCATTGTACAGAACTGATTAGAAATAAAGCTGTTTTCAACTTTGCCTCAGACATGTGGCCTTATTCTGATATTGTGTGTGCCTGGGCCCCATTGCAGTACTATCACCGACTGAGCAATACTTATATTATAGACAGACAGGGTTGCTAAAGTAACACAGTTCAAGTGAATGTTGTCTTTCCCAAAGAGAGGCAGATGTGGGCTGAATATTGTGATGATGAGGGGTTCAAATCAGAGTAACTTTATGCTATCCAAACTCTGGGGATTTTAAAAGGAACTAGACCAAGTggggattaaaaataaaataaatctcaggTTGAGCTTTGGTGCCACATTGATAAAACTGATAAGTCTGATAAGTTTTAAGGAATCTACATTcctgggaaatgttttttttggaaTGGGAAATGCtgtgaatgtattaaatatgtctaGCAGCACAGTGTGCATAGATGTACATTTCTGGAGAGACTTGTGATGGGTGAGAATAATCACTGCCTTGAACCCACAGCTTGAATCTGTCCTTTAATCAAATTAGCCATAAACAGCTTGATCTGAGCACATGCCTTTGCCCTTGTgaagactggactggactggacctcTTCTGGAACAGAGAATTCCACACAGTCTAGATCCTTCTGAACCCAGAATTACTCCTCTGGGTTCAGTCAGAAATAGAGGCTCTTCAGAGCTCCACGAATACCCTGGAACCACCTCTGTGTCAGTGAAGGCCATTCCCCAGTCCTTGCAAAACCAGGGTATCCACAGAGTCCCGTTTTGTGGGGACTCCTGGTTccagaacagaaaaaacagaaccaTTTACTTGCTAAATCACAGTGATCTCCAGCTGGGCCTTTAAGCTACCATGGTCCTGTAAAGATCCCCAAGACTATGGCTCTTCAGGTCTGTGTTTGTGCCACTGCTGCACTGCATAAGTGACACAGCGTGGCTCATCTACTGAGCATCCCCTTTACCGAGTGAACCTTATATAGATCCTCTGTCAGGGGACCCTCCATCACCCCGCCCGCCTCACCACGTCTCCTCAGATATCTAACTctataaaaggaaaagaaccTGCGATAATGTCAATTAATTTATGGCAGGGTGGCACTGGGTGTGCCTCTTTGGGGGTTAAACTGGACCTAGCTCTAAATCATGAGCTATTTAGAGATTGGAGTTTGGTACTGGCTCATATTAAGAGTTAGTGTTACATGGTGGTTATACATGCCTTCTCAATATTAGCACATATGCATTGACTGTATCACTGCATAGAAACACAATGTGTAACTCCTCATGTATGATTTTGATACTGCAAAAACTCAGCAACTAGTCACAATTGGACAGTTTACACAACCTGATAGGATTGTGAGGAAATACACCATTTAAACTTGCTCCTTCCTTAtcagaatttaattaattaatagaataTCAAATACAGTAGCCTATACAGCcttccagagagagagagagagagagagagagaaagaaaacattgcaaaaaagaaactaaaccaaaaacattgcaaataacAGTGCACCAaccacagacaaaaaaacaagaccACCAAATCCAATTGCAACATCTAGACACTCTGCTACCATGTGAAGCATTCAAATGATAGGCTTTTCTTCAATCAGAGTGTTTCACCAAGTCCAGGTCTCCCCCAAACCTCCACTGCTCTGGAATTCAGTGCCGTAAAAACGTTAATGGACACAAATATCCTTCTGATcccaaagctgccattggccagAGCCCATGCCCCTAAAAGTGAACGATTCTAAATCTGGAAGGCTGTGGTGTGAAGGGGCGGGCCTGTGTGGCCGGTTTAAAGGCTGGCTGAAGCCCCAGCTGACTCCTAGACTTTCTGTGGAGAGGAGTGCTGACAGGTCATTCTTCTGTGGGAGTGGGGGGTCCTCGGTAATCTACAGCCATGCCGACAGACGCGCAGCAGGATGCGCGCTCCTTCCTCAGCGAGGAACAGATCAGCGTGGCTGTGGATTGAGCATATAGACAAAGACACAGTGTCGCACCGTTGCATGTGGACCCCTGCTTCCCAGGAACCTTACAGTGAgccgtgtctctgtgtctgctcCCTCTCAGAGTTCAAGGCCGCCTTCGACATGTTTGACACTGACGGTGGCGGTGACATCAGCACCAAGGAGTTGGGCACCGTCATGAGGATGCTGGGGCAGAACCCCACCAGAGAGGAGCTGGACGCCATCATTGAGGAGGTAGATGAGGACGCCAGCGGTACCATTGACTTTGAGGAATTCTTGGTCATGATggtgcagcagatgaaagaggATCAGGCCGGAAAGAGCGAGGAAGAGTTGGCAGAGTTCTTCCGCGTCTTTGACAATGACCGTCCCTTGAGAGAGCTCAGGATTGAGGGAGTGGATATTGTAAGATGGGAGCCTCTGCTCAGGCTTTCACGCATCTGTGTTTCTGCGGCAGGAACGCTGACGGCTACATCGACAAAGAGGAGTTCTCCATAATCATCCGCAGTGCAGGGGAGAACGTGTCGGATGCGGAGATTGAGGAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12042 TNNC2; troponin C, skeletal muscle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34987 lncRNA downstream 203985 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA downstream 203985 39842331 ~ 39847044 (-) False G27949
TU34962 lncRNA downstream 259545 39790546 ~ 39791484 (-) True G27927
TU34927 lncRNA downstream 286612 39763930 ~ 39764417 (-) True G27904
TU34831 lncRNA downstream 595171 39455040 ~ 39455858 (-) True G27833
TU35107 lncRNA upstream 206299 40268272 ~ 40273788 (-) True AMCG00008042
TU35109 lncRNA upstream 215190 40277163 ~ 40277647 (-) True G28036
TU35108 lncRNA upstream 216754 40278727 ~ 40288574 (-) False AMCG00008042
TU35176 lncRNA upstream 565804 40627777 ~ 40632764 (-) True G28095
TU35192 lncRNA upstream 597908 40659881 ~ 40663760 (-) True G28110
AMCG00008029 mRNA downstream 42427 39986928 ~ 40008602 (-) True AMCG00008029
AMCG00008026 mRNA downstream 66596 39981612 ~ 39984433 (-) True AMCG00008026
AMCG00008025 mRNA downstream 105677 39929531 ~ 39945352 (-) True AMCG00008025
AMCG00008019 mRNA downstream 422927 39592332 ~ 39628102 (-) True AMCG00008019
AMCG00008016 mRNA downstream 484475 39557576 ~ 39566554 (-) True AMCG00008016
AMCG00008032 mRNA upstream 15535 40077508 ~ 40091201 (-) True AMCG00008032
AMCG00008033 mRNA upstream 30750 40092723 ~ 40101200 (-) True AMCG00008033
AMCG00008034 mRNA upstream 70570 40132543 ~ 40137452 (-) True AMCG00008034
AMCG00008040 mRNA upstream 159394 40221367 ~ 40226406 (-) True AMCG00008040
AMCG00008042 mRNA upstream 211579 40273552 ~ 40278906 (-) False AMCG00008042
TU34865 other downstream 546437 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 959274 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 995350 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 1001432 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 1886487 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 954186 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 1137516 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 1784960 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 2699031 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 4355901 44417874 ~ 44418196 (-) True G28970

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU73500 True 973 lncRNA 0.51 6 NC_053116.1 33750289 ~ 33757122 (-)