RNA id: AMCG00008029


Basic Information

Item Value
RNA id AMCG00008029
length 3883
RNA type mRNA
GC content 0.50
exon number 20
gene id AMCG00008029
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39986928 ~ 40008602 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGGCAACTCAGTAACAAGGGgtggagaagaggaggaggaggaggaggagaagaggaggaaggagggCAGAGAGGTGGACATGCAGCTGGGGCCGTCCTGGAATCCACCTGCTGCAGCTTTGTCCACCTCCCGGTGTGTTACAATCACCCAGATGCCATCCCTGGTAGATGCCATTGACAGAGGACAGGCTGGGGTGGGGGAGCGATTGACAGAACTGAAGGTGGCTGTGTTTGCGAAATCATTAAAGAGCTTTCAGCACTGCCTTGTCTGGCACGGTGCGGCCCCCCTGGCTGCCCCAGGCACTCTCGCACTCACAACTGCCCTGCTAATTACTATCTCTTTGAATGAGCGTCAGGGGTTCCCCTGGGATCACGGGCAATACAAGGATGGCGCAGAGTATCTGGCCAGCTCAGCTCTGCCCCGGGCCAGTCTGGACGCTCTGCTGGGGCTTCAGTTTCCTGTGGGGCAgtttaGGGAGATGCTAGATCTTGTAATCGCTCACAGTGGATGTGCAGACGCCCAGAGCTCGGCCTTTTGGAAACAGAGTGTATCGCCGGCAACCTCTCTCCCACTGCCGCCCGATGGCCCCCCAGGTGAGCTGAAGGAGCTGAACTCTAGTGAATTCGCAGTGAGTGGAACGGACTTTGCTTCAGACTCAGcCTTCCCTCTCTCAGGTCACCTCTGGCTCTCCAACACAGACCCCGCCCACTACCCCTCCCCTGTCGACAGATCTGCTGGCCCAAGACCAGCCATGGCTGCCTACGGACAGACTCAGTACAACCCTGCAATGCAGCCTCCCGCCCCCTACACCGCCTACTCACACCACGGACAGGGCTACAGCATGCCAGCCTACAGCAGTATTTCATCAGGCATTTTCCAGGGGGCCAATGGGATCAGCAGCTCAACTCCCTTTAGCCCCTCCCAGCAGgATTTCTCTGCTTATCCAGCCTTCAGCCAAGGCCAGTACTCACCTTACTACAGCTCTCACTACAACACACCTTACCTCACCCCCAGTAATGTCAGCTCCACGGCGATCCCCTATCAGCACCCGGAGCACACCCCTGTCGTGGCCAATCAGAGTCCAGAGTCACTAGCAGGAGAGTACCACCCACCCCCAAGCCCCCCCACACCTGGTAAGGACCAAGAGGTGGGACCCACCAGGAGAGCGACTGAGAGCAAGCTGCGTGGGAGGAAGAGGACCAACGACCCTGCGCCCCCCCTGGACTCAGATATCGAGcgtgtgtttgtgtgggacCTGGATGAAACCATCATCATCTTCCACTCTCTGCTCACAGGGACGTTCGCCTCGCGCTTCGGCAAGGACTCTGCCAAGGCCGTGTCTCTGGGGCTGTGGATGGAGGAGATGATCTTCAATTTAGCCGACTCTCGCCTCTTCTTCAACGACCTGGAGGAATGTGACCAAGTTCATATTGACGACGTGGCCTCCGATGACAATGGGCAGGATCTGAGcTCGTACAACTTTGCGGCCGACGGCTTCCAGAGCCCATCAGGGGGCGCTACGCTCTGCCTGGGGTCGGGGGTTCACGGCGGGGTCGACTGGATGAGGAAGCTGGCGTTCCGGTACCGCCGAGTCAAGGAGGTCTACAACACCTACAAGAACAATCGTGAGGAGTGGCTGCAACTGCGGAGGGAAATGGAGGTGCTGACTGACCTCTGGCTGACCCACGCGCTCAAGGCCCTGGCCCTCATCAGCTCCAGGCCCAACTGCGTGAACGTGCTGGTGACCACAACCCAGCTGATACCAGCGCTGTCCAAGGTGCTGCTCTATGGCCTGGGCACGGCATTCCCCATCGAGAACATATACAGCGCCACCAAGACAGGGAAGGAGAGCTGCTTTGAGCGTGTAGCCCAGCGATTCGGGCGCAGGGCCGTGTACGTAGTCATCGGCGACGgagtggaggaggagacggGTGCAAAGAAAAGGAACATGCCGTTCTGGAGGGTATCCTGCCGGGCTGACCTGGAGGCCTTGTGCCATGCACTGGAGCTGGACTACCTCTAGGGGGCGATAGTTCCCCTGCATCCTTCACCTTCTCACACTCTCAGGACTCTGTGGACGGCTGGCACTCAATACCAAACAGCACGGCCAGAGCGAGGGAGCGTTCTTTCTACCAGCTGTAAatcatgtctttttttaatggaaaattcTACCCAGCTTTAAtcacaaacactttcacaagtGCTACAAGAGATTCCTAAAACAGTCATCTTTCCTTTAATTACAGCAAGTTGCACTGAGAAAAGGATCTAAGGTGAAAATATTGGACACCCTTCCCTTATTGGGGGATCTTTTATGATTATGCAAAAAAGACACcaagaaaacatgaatatgcTTCAATCTTTCTTTAAGATGGGGGGCATCTCTGATAATGTCAAAGGGACACAAAGACATCAATTCTGGGTCGCTGGTTCGATACCCACCCTGCCCAGTACTGATCAGCAGCCTCTAGGGGCCGGTGGCTTTTAAGACATATGCTGAGGGTGCAGCCTTTTGTGTTGCAGCTCAACAGCCTTTAACACTTCGAATCACCTGTGGGCGAGTTGCTTTTAGTCAGGCATCGGAAAATGTATTGGAAAAGACTGGATAGACCAGACAACCACTTCTAGATTCTTACtcttgttgtctttttttttaacaatttttctttttaaactgtgcACTTGAAATGACTAAATCAGGAATTACACCCGCACAGCAAAGAGAGTGAAAGACAAGCTGTCCTTGGGCAGTGTTGTCTCCTGTAGTGTTTAGATGAAGGACGGGACCTGCTGAGTGGACACTTTTTTCATGCAGGGGTTCTTCAATATAGAATAGAGGAAGTGTTgctaaatgtgttttaagagctaattttatttgttttgtttaatatttatatatgaaaaatgagaaaacaattcTTCACTACAGATTTTGTTTCGTCATCAGCTTTACCCTACATATATAACAATTATTCCTTTGTCAGTAAACTGAGTCATGACTGACCTTATAAACTCAAAACCTATGTTCAGACGAGGTGCCATCTAGCAGCCCTGATGTCTGGAAAGAAACcacaacagtaacaacaacacacacaaaaaacgcATCAATGATCTTAAAATGGCTGAAGGCAAAAGGAATTATTGAAAAGGTGCCAAAAAGCGGCTGGATGTTTGTGATGCTGCAGGTGACTTACATTTCTTTGAGTTAAAAACGGCTTCGACAGGGCATACAAAAATACGCaattctgtaaaaacaaataattaaaaaacgtTTTAAGGGTCAGACCATTTGTATGTGAGTGTTTTCTGGGAGACGAAACTGGTTGGTTTCTTTTCCACGGTTTCTTTGGTTTCTTTCTGAGCCTGGAGGCCACGCGTTGTGCAGAAGCATGGAGCGcagctgagcaccagagcacaCCTGTGGAGAGAGTCTGTCTGTCCGCCGCCACGCAGCGCACGCATACTTCCACTTTCTTAACTGTCTGCCTTCACCTGTCTGTGTGCCGAGCCTTATACTTGCATAGGATAATCTCTTTTGTGTATAATTGTACAAATTGTTCTTATCACATCCAACGATTGTCTGAAGAGCTGAAGAGATCTGAGACATTCTGCTTCTTTAGTAAATCatccaaaaataaaagtgataGAAATTAAACAACTGGGGCATTGGTTTCAGTAGttgctgttttttgtatattttgtttctggtgTACTGTTTCCTcctcattttttttaactatatacactgtaaatatatacatataaatatattaaataaagtggTATGGGTTGTAATTGGACTTTGCATGTGTCTGCTACACTGTGCCTTCCTCTGCCTTACCTATGATCTGTATATAAGTTGGTTTTGTGATGGTGAC

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process

KEGG:

id description
K17620 EYA2; eyes absent homolog 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34987 lncRNA downstream 139884 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA downstream 139884 39842331 ~ 39847044 (-) False G27949
TU34962 lncRNA downstream 195444 39790546 ~ 39791484 (-) True G27927
TU34927 lncRNA downstream 222511 39763930 ~ 39764417 (-) True G27904
TU34831 lncRNA downstream 531070 39455040 ~ 39455858 (-) True G27833
TU35107 lncRNA upstream 259670 40268272 ~ 40273788 (-) True AMCG00008042
TU35109 lncRNA upstream 268561 40277163 ~ 40277647 (-) True G28036
TU35108 lncRNA upstream 270125 40278727 ~ 40288574 (-) False AMCG00008042
TU35176 lncRNA upstream 619175 40627777 ~ 40632764 (-) True G28095
TU35192 lncRNA upstream 651279 40659881 ~ 40663760 (-) True G28110
AMCG00008026 mRNA downstream 2495 39981612 ~ 39984433 (-) True AMCG00008026
AMCG00008025 mRNA downstream 41576 39929531 ~ 39945352 (-) True AMCG00008025
AMCG00008019 mRNA downstream 358826 39592332 ~ 39628102 (-) True AMCG00008019
AMCG00008016 mRNA downstream 420374 39557576 ~ 39566554 (-) True AMCG00008016
AMCG00008014 mRNA downstream 444982 39528389 ~ 39541946 (-) True AMCG00008014
AMCG00008028 mRNA upstream 42427 40051029 ~ 40061973 (-) True AMCG00008028
AMCG00008032 mRNA upstream 68906 40077508 ~ 40091201 (-) True AMCG00008032
AMCG00008033 mRNA upstream 84121 40092723 ~ 40101200 (-) True AMCG00008033
AMCG00008034 mRNA upstream 123941 40132543 ~ 40137452 (-) True AMCG00008034
AMCG00008040 mRNA upstream 212765 40221367 ~ 40226406 (-) True AMCG00008040
TU34865 other downstream 482336 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 895173 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 931249 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 937331 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 1822386 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 1007557 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 1190887 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 1838331 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 2752402 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 4409272 44417874 ~ 44418196 (-) True G28970

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_17354694_17378496.mRNA True 2081 mRNA 0.51 15 CI01000340 17354254 ~ 17378496 (-)