RNA id: AMCG00008030



Basic Information


Item Value
RNA id AMCG00008030
length 1053
RNA type mRNA
GC content 0.54
exon number 1
gene id AMCG00008030
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40075226 ~ 40076278 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAGTCTCCTCCCACATATAGAGACAACTTGTGCATCAGCGTGGGAGGCCCGAGTGTGAACCAATCCACATGGAATCTGTCCAGCTGCCTTTTTGAGTTGATTTTGCCCTGGAACGGCACTGTCAACTGCCTAATCGCTCTGTTCTCGGTCCTGTCCTGCATATCCATGGGAGTCAATGGCTTCACCCTTCTTGGGATCATGAAGTCTGAGGAGCTCTCCTGGCAGCCCCGGTTTATATTGTTGAAAAACTTGGTGTTCAATGACCTGCTGATGATATGTGTCCTGCACCCCACCATCCTCTACTGTCTGATCCAGCGGCAGACGCTCTCGCTGGGGGTCTGGTGTCTGATTCAATATTACGTTGCGACTACGTGCATTTTTTGCACCATATACACTTTGACTCTTATGGCTTTGGAGAGGTACCTGTACATCTGCCATGCCATTCAGTACATCAACATCCTCACCTCCCGGCGGGTGAAGCTGGGCGTCACCCTGATGTGGCTGGTGTCATTTGCTATTACTGGTGTGTACTTGATCCTCCTGCACATTGGTCAGGACTCCCTCGCTCTCGGGAGCGCCACCTACGGCCTTTTCTGTGAGCCAGACACCATAGAGAAGTGGATGGACTTTCCCATCTTGGCCACCATCTTCAGGAAATTGCTTGGATCGGCCTCCATCCTTGTCTGTGTCTTGGTCTTCACCTTCTCCTATGTCAAGATGTACAGGGAAGCCGTGAACGCGGTGGAGCCTTTTAACCAGGTCAACAGCCGAGCGCGCAGAACCATCCTCTTCTACTGCATGATGTTCTTCCTCCAGCTGCTGCCCTGCTGGCTGAAGATGGTGACTGACATCCTGGGGGAGCTGGACAGGGTGGTTCTCAGCGACCAGGGCAGCGCCAGGGTTCTGCATGTGGTGCTGCTGCTCATGGTCATCATACCGCCCCTCATTAACCCGCTCATCTTCAGCATCAGGAACAAGGAGCTGAGGAGAGCCCTGCCACGCGTGGTTTTCAGGAGGTGGGTTCCAGGTTCCCCTGACACCTCTGACTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU35021 lncRNA upstream 15021 40051890 ~ 40060205 (+) True G27973
TU35006 lncRNA upstream 71526 39957987 ~ 40003700 (+) True G27960
TU34902 lncRNA upstream 470398 39604612 ~ 39604828 (+) True G27881
TU34873 lncRNA upstream 482815 39580779 ~ 39592411 (+) True AMCG00008007
TU34891 lncRNA upstream 533309 39540382 ~ 39541917 (+) False AMCG00008010
TU35105 lncRNA downstream 201136 40277414 ~ 40277687 (+) True G28032
TU35194 lncRNA downstream 587694 40663972 ~ 40721691 (+) False AMCG00008051
TU35229 lncRNA downstream 675197 40751475 ~ 40755976 (+) True G28140
TU35231 lncRNA downstream 682420 40758698 ~ 40759010 (+) True G28141
TU35233 lncRNA downstream 684988 40761266 ~ 40761633 (+) True G28143
AMCG00008027 mRNA upstream 1116 40062721 ~ 40074110 (+) True AMCG00008027
AMCG00008024 mRNA upstream 99375 39972563 ~ 39975851 (+) True AMCG00008024
AMCG00008023 mRNA upstream 226980 39843224 ~ 39848246 (+) True AMCG00008023
AMCG00008020 mRNA upstream 240274 39817027 ~ 39834952 (+) True AMCG00008020
AMCG00008021 mRNA upstream 266197 39797335 ~ 39809029 (+) True AMCG00008021
AMCG00008031 mRNA downstream 24908 40101186 ~ 40114340 (+) True AMCG00008031
AMCG00008035 mRNA downstream 95419 40171697 ~ 40172836 (+) True AMCG00008035
AMCG00008037 mRNA downstream 131859 40208137 ~ 40213983 (+) True AMCG00008037
AMCG00008038 mRNA downstream 139637 40215915 ~ 40237710 (+) True AMCG00008038
AMCG00008036 mRNA downstream 165195 40241473 ~ 40247170 (+) False AMCG00008036
TU35023 other upstream 15840 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 240290 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 570849 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 1366311 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 1638631 38432045 ~ 38436595 (+) True G27551
TU35066 other downstream 165034 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 1916581 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 3029435 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 3070495 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 3216318 43292596 ~ 43301422 (+) False AMCG00008132

Expression Profile