RNA id: AMCG00008034


Basic Information

Item Value
RNA id AMCG00008034
length 795
RNA type mRNA
GC content 0.59
exon number 7
gene id AMCG00008034
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40132543 ~ 40137452 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGACCAGGTCTGTTCAGGTAAGGGGCCGAGCTTGGGCTTCAGACTGTTACTGTGGAGTCTGGCGGGGGGCCAGTGTCCGGGAGGGTTCCATTCTGAGAGGAGAGCAAATCTCGCGCGCGGGGGTGCCAGCCCTCGCCTCGGTCCCGCACCGCTGCTGGCCGTGTCACGACGGAATAAACGGATGGCTCGGCAGACCTGTTGCCAATTCCTCCCCTTTCTCTGCTTCTTTGGCTGGATGGATGGCCGCCAGCAGTGAGGAGGAGCTTACAGCACAAAGTGCTCCCAGCAGCAGGATGTTCCAGCTGTCTGCACGCTGTGTGGGGAGCCTGCTGGCCAGACGGGGGATTACAGCCAGTGGCAGGGTGAGGGCAGCCAGCCACGGACATGAGATGGCCAAACAGGAGGACATGTCCCTTCCCATGTACTGTGACCGCCGGGATGTCCCGCTGCCCGACATCCCCTTTCAGCGCACCCTGAGCAGCCCGCAGCTGAGCCTGAAGCAGCGAGAGGGCGGGTCCTGGAAGGAACTGTCCATGGACGAGAAGATCGCCTTGTACCGCATAGCGTTCAATCAGACCTATGCAGAGATGAACAAGCCCACGAACGAGTGGAAGACGGTGGTGGGGGGAATCTTAATCTTCCTGGGCTTGACCAGCCTCATCGTGTGGTGGCAGCGTGTGTATGAGGATTGGAAGGCCCTTCAGGCCAAAAGGATGATTGACATGCGGATCAACCCAGTCGAGGGCTTTTCCTCCAAGTGGGACTATGAGAAGAAGCAATGGAAGaaataa

Function

GO: NA

KEGG:

id description
K02263 COX4; cytochrome c oxidase subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34987 lncRNA downstream 285499 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA downstream 285499 39842331 ~ 39847044 (-) False G27949
TU34962 lncRNA downstream 341059 39790546 ~ 39791484 (-) True G27927
TU34927 lncRNA downstream 368126 39763930 ~ 39764417 (-) True G27904
TU34831 lncRNA downstream 676685 39455040 ~ 39455858 (-) True G27833
TU35107 lncRNA upstream 130820 40268272 ~ 40273788 (-) True AMCG00008042
TU35109 lncRNA upstream 139711 40277163 ~ 40277647 (-) True G28036
TU35108 lncRNA upstream 141275 40278727 ~ 40288574 (-) False AMCG00008042
TU35176 lncRNA upstream 490325 40627777 ~ 40632764 (-) True G28095
TU35192 lncRNA upstream 522429 40659881 ~ 40663760 (-) True G28110
AMCG00008033 mRNA downstream 31343 40092723 ~ 40101200 (-) True AMCG00008033
AMCG00008032 mRNA downstream 41342 40077508 ~ 40091201 (-) True AMCG00008032
AMCG00008028 mRNA downstream 70570 40051029 ~ 40061973 (-) True AMCG00008028
AMCG00008029 mRNA downstream 123941 39986928 ~ 40008602 (-) True AMCG00008029
AMCG00008026 mRNA downstream 148110 39981612 ~ 39984433 (-) True AMCG00008026
AMCG00008040 mRNA upstream 83915 40221367 ~ 40226406 (-) True AMCG00008040
AMCG00008042 mRNA upstream 136100 40273552 ~ 40278906 (-) False AMCG00008042
AMCG00008043 mRNA upstream 152198 40289650 ~ 40298668 (-) True AMCG00008043
AMCG00008041 mRNA upstream 191279 40328731 ~ 40356747 (-) True AMCG00008041
AMCG00008044 mRNA upstream 256626 40394078 ~ 40415758 (-) True AMCG00008044
TU34865 other downstream 627951 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 1040788 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 1076864 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 1082946 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 1968001 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 878707 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 1062037 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 1709481 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 2623552 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 4280422 44417874 ~ 44418196 (-) True G28970

Expression Profile