RNA id: AMCG00008036


Basic Information

Item Value
RNA id AMCG00008036
length 1665
RNA type mRNA
GC content 0.41
exon number 5
gene id AMCG00008036
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40241312 ~ 40247238 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTGTCGAGATCGAGACCATGACTCCCGGAGACGGAAGGACCTTCCCCAAAAAAGGGCAGACCTGTGTGGTGCATTATGTCGGTTCATTGACAAATGGACAGAAGTTTGACTCATCCCGCGACAGAGACAAGcctttcaagtttaaaatggGAAAACACGAGGTCATCCGAGGGTGGGAGGAAGGAGTTGTCCAGATGAGTGTTGGTCAGAGGGCCAGGCTCACCTGCTCACCGGATTTCGCCTACGGATCTAAAGGCCACCCTGGCATCATCCCACCCAATGCCACTTTGATTTTCGATGTGGAACTTCTAAGCCTGGAATAAAGCAACCCGTTATGTTGCCTCCTACCTTGGGAACATGGAGAAAGCTAGGAGAGTGTGCACTTGAACATAAGGGGCTTGTCTTATAGTTCCACTTTGGTCACTATCTATCCATATAGAAAAGTATGTGTATCATCAGTgagagctttttgtttttctttgttttttacacaCCCTTTTAAACTATGGGCCATAACCTTAAAAACCTCGTGACGTTCTtaatcttgaattgaattgtgcttttctttgtcctatttttttttttggtgtagaATAAGTTGTGCATGATCAAGCATTTACAAATATACCaatgaaaagcagcagcaggaaaATTTTAACCTGGTTGAATCTAAGCAGTAGATCTGTGGGGTGCTACAGCCATGAGACCAACACGATGTTTAAACTGAGATggggaaataaaaagcacagtCTTAAACTTTTCACTCTTTGCTCCTGGTTGTTCTTGAGACGAGGATATTGCACCAAATGTACTGTGCAGTCTCTTAGGAATTGAGAGAGGTTGCTTTCattataatagaatatatttggTTAGTAAAACAATAGAGCCACTGTTACTACTACAACAACGAGATGTAAGCAAGGAAATCTGACTGCAGTACAGGTAAATTATCCCCTTTTCATATGGAAGTGCTTTTGATGTAAATAACGCAGAACAATTCAGTATTCCAAACACAAGTAATGAGTGGAGTGCCTCCAGACTATTGTTCCTTCACCCACACACAACTAGAGTGGATTTGCATGTCTGTTTAGCATTCAAGATCTATACTTGTATGATTTAACTAGTTTGgtcccccccctctccccaccaCTCCTCTTTAAAGTCAACTATTTTTCACAAAGCCATAAATGGAAGACAACAAATCACACCATTCTGGGAAAGCGTacatagttgtatttttttcttaatacagTGCCTAAACAGCTGGGCAGGGGTTTAAGAAATCTGCCcccatttttgttgttgttgtaacaACTTTGCCATTGTATTGTTTCAGATGCCAACTTTTCTGAATCGACGTAAATACGATGCTGTACCTTTTAAGGCTTGAACAATTCAGACAACTTTTACAAACGATAGGTGTTACCAGTGATTTGCCCGCACTGCCTAAATATTTTTGTGGGGCAAGAGGCATCCTTTGTAATTATTTGGAGGTGctgatttagaaaaacaaaaagaaaaaaagattttcaaaaGATGCTGGTCATCACAACTCTCGATGTATGCTGTCTGGTGTGGCTTGGGTTGTCctttactgcactgtatatcTGCTGTGTGCTGAATAGGCAAGAAAAACCAatgattaattcaaaatatgcTGT

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0033017 sarcoplasmic reticulum membrane cellular_component
GO:0005528 FK506 binding molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35021 lncRNA upstream 181268 40051890 ~ 40060205 (+) True G27973
TU35006 lncRNA upstream 237773 39957987 ~ 40003700 (+) True G27960
TU34902 lncRNA upstream 636645 39604612 ~ 39604828 (+) True G27881
TU34873 lncRNA upstream 649062 39580779 ~ 39592411 (+) True AMCG00008007
TU34891 lncRNA upstream 699556 39540382 ~ 39541917 (+) False AMCG00008010
TU35105 lncRNA downstream 30244 40277414 ~ 40277687 (+) True G28032
TU35194 lncRNA downstream 416802 40663972 ~ 40721691 (+) False AMCG00008051
TU35229 lncRNA downstream 504305 40751475 ~ 40755976 (+) True G28140
TU35231 lncRNA downstream 511528 40758698 ~ 40759010 (+) True G28141
TU35233 lncRNA downstream 514096 40761266 ~ 40761633 (+) True G28143
AMCG00008038 mRNA upstream 3763 40215915 ~ 40237710 (+) True AMCG00008038
AMCG00008037 mRNA upstream 27490 40208137 ~ 40213983 (+) True AMCG00008037
AMCG00008035 mRNA upstream 68637 40171697 ~ 40172836 (+) True AMCG00008035
AMCG00008031 mRNA upstream 127133 40101186 ~ 40114340 (+) True AMCG00008031
AMCG00008030 mRNA upstream 165195 40075226 ~ 40076278 (+) True AMCG00008030
AMCG00008039 mRNA downstream 5042 40252212 ~ 40267152 (+) True AMCG00008039
AMCG00008047 mRNA downstream 322662 40569832 ~ 40578430 (+) True AMCG00008047
AMCG00008045 mRNA downstream 361442 40608612 ~ 40624271 (+) True AMCG00008045
AMCG00008048 mRNA downstream 385474 40632644 ~ 40647166 (+) True AMCG00008048
AMCG00008046 mRNA downstream 401973 40649143 ~ 40661046 (+) True AMCG00008046
TU35023 other upstream 182087 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 406537 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 737096 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 1532558 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 1804878 38432045 ~ 38436595 (+) True G27551
TU35555 other downstream 1745689 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 2858543 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 2899603 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 3045426 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 4775978 45023148 ~ 45036416 (+) True AMCG00008177

Expression Profile