RNA id: TU35066


Basic Information

Item Value
RNA id TU35066
length 1894
RNA type TUCP
GC content 0.43
exon number 5
gene id AMCG00008036
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40241312 ~ 40247238 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTAAAGCAAGCGGGGACAGCACTCACCCCTCGCAAAACGAGCACAAATCATGGCCTCCCCCCTCTTCCGGTTGGACTGCGGAGCGGAAGCCGCCGCGTCACATGAGCAGCGCATGCGCGGCGGAGCCTCAGTGCTGCACAGGGTCGCCGCCGAGACAAGATGGGTGTCGAGATCGAGACCATGACTCCCGGAGACGGAAGGACCTTCCCCAAAAAAGGGCAGACCTGTGTGGTGCATTATGTCGGTTCATTGACAAATGGACAGAAGTTTGACTCATCCCGCGACAGAGACAAGcctttcaagtttaaaatggGAAAACACGAGGTCATCCGAGGGTGGGAGGAAGGAGTTGTCCAGATGAGTGTTGGTCAGAGGGCCAGGCTCACCTGCTCACCGGATTTCGCCTACGGATCTAAAGGCCACCCTGGCATCATCCCACCCAATGCCACTTTGATTTTCGATGTGGAACTTCTAAGCCTGGAATAAAGCAACCCGTTATGTTGCCTCCTACCTTGGGAACATGGAGAAAGCTAGGAGAGTGTGCACTTGAACATAAGGGGCTTGTCTTATAGTTCCACTTTGGTCACTATCTATCCATATAGAAAAGTATGTGTATCATCAGTgagagctttttgtttttctttgttttttacacaCCCTTTTAAACTATGGGCCATAACCTTAAAAACCTCGTGACGTTCTtaatcttgaattgaattgtgcttttctttgtcctatttttttttttggtgtagaATAAGTTGTGCATGATCAAGCATTTACAAATATACCaatgaaaagcagcagcaggaaaATTTTAACCTGGTTGAATCTAAGCAGTAGATCTGTGGGGTGCTACAGCCATGAGACCAACACGATGTTTAAACTGAGATggggaaataaaaagcacagtCTTAAACTTTTCACTCTTTGCTCCTGGTTGTTCTTGAGACGAGGATATTGCACCAAATGTACTGTGCAGTCTCTTAGGAATTGAGAGAGGTTGCTTTCattataatagaatatatttggTTAGTAAAACAATAGAGCCACTGTTACTACTACAACAACGAGATGTAAGCAAGGAAATCTGACTGCAGTACAGGTAAATTATCCCCTTTTCATATGGAAGTGCTTTTGATGTAAATAACGCAGAACAATTCAGTATTCCAAACACAAGTAATGAGTGGAGTGCCTCCAGACTATTGTTCCTTCACCCACACACAACTAGAGTGGATTTGCATGTCTGTTTAGCATTCAAGATCTATACTTGTATGATTTAACTAGTTTGgtcccccccctctccccaccaCTCCTCTTTAAAGTCAACTATTTTTCACAAAGCCATAAATGGAAGACAACAAATCACACCATTCTGGGAAAGCGTacatagttgtatttttttcttaatacagTGCCTAAACAGCTGGGCAGGGGTTTAAGAAATCTGCCcccatttttgttgttgttgtaacaACTTTGCCATTGTATTGTTTCAGATGCCAACTTTTCTGAATCGACGTAAATACGATGCTGTACCTTTTAAGGCTTGAACAATTCAGACAACTTTTACAAACGATAGGTGTTACCAGTGATTTGCCCGCACTGCCTAAATATTTTTGTGGGGCAAGAGGCATCCTTTGTAATTATTTGGAGGTGctgatttagaaaaacaaaaagaaaaaaagattttcaaaaGATGCTGGTCATCACAACTCTCGATGTATGCTGTCTGGTGTGGCTTGGGTTGTCctttactgcactgtatatcTGCTGTGTGCTGAATAGGCAAGAAAAACCAatgattaattcaaaatatgcTGTTGCAATAAAGTGCTTTCTACCAGCTTTGGAAAACGTGTACGAGTGATTCCTTTCATCTTCTACAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35021 lncRNA upstream 181107 40051890 ~ 40060205 (+) True G27973
TU35006 lncRNA upstream 237612 39957987 ~ 40003700 (+) True G27960
TU34902 lncRNA upstream 636484 39604612 ~ 39604828 (+) True G27881
TU34870 lncRNA upstream 648901 39510411 ~ 39592411 (+) False AMCG00008007
TU35105 lncRNA downstream 30176 40277414 ~ 40277687 (+) True G28032
TU35194 lncRNA downstream 416734 40663972 ~ 40721691 (+) False AMCG00008051
TU35229 lncRNA downstream 504237 40751475 ~ 40755976 (+) True G28140
TU35231 lncRNA downstream 511460 40758698 ~ 40759010 (+) True G28141
TU35233 lncRNA downstream 514028 40761266 ~ 40761633 (+) True G28143
AMCG00008038 mRNA upstream 3602 40215915 ~ 40237710 (+) True AMCG00008038
AMCG00008037 mRNA upstream 27329 40208137 ~ 40213983 (+) True AMCG00008037
AMCG00008035 mRNA upstream 68476 40171697 ~ 40172836 (+) True AMCG00008035
AMCG00008031 mRNA upstream 126972 40101186 ~ 40114340 (+) True AMCG00008031
AMCG00008030 mRNA upstream 165034 40075226 ~ 40076278 (+) True AMCG00008030
AMCG00008039 mRNA downstream 4974 40252212 ~ 40267152 (+) True AMCG00008039
AMCG00008047 mRNA downstream 322594 40569832 ~ 40578430 (+) True AMCG00008047
AMCG00008045 mRNA downstream 361374 40608612 ~ 40624271 (+) True AMCG00008045
AMCG00008048 mRNA downstream 385406 40632644 ~ 40647166 (+) True AMCG00008048
AMCG00008046 mRNA downstream 401905 40649143 ~ 40661046 (+) True AMCG00008046
TU35023 other upstream 181926 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 406376 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 736935 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 1532397 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 1804717 38432045 ~ 38436595 (+) True G27551
TU35555 other downstream 1745621 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 2858475 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 2899535 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 3045358 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 4775910 45023148 ~ 45036416 (+) True AMCG00008177

Expression Profile