RNA id: AMCG00008038



Basic Information


Item Value
RNA id AMCG00008038
length 939
RNA type mRNA
GC content 0.56
exon number 9
gene id AMCG00008038
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40215915 ~ 40237710 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGGGAGCCGGCAGCACAGAGCTCAGGACCTCGTGAAAACGTGCTGCTTGCAAAGGGGGACTCCGATCATAAAGCCGTTAAGATGCCCCTGTGCAGGAAGGTCTGCTATGCGGTGGGCGGAGCTCCTTATCAGATGACATCCAACGCCATCGGCTTCTTCATGCAGATCTTCCTGTTGGATGTGGTGCAGACGCATGTGGGATGTGTGACTCACAGACACCATAAAAGCTGTAAAACAGTGCGGTGCTCTCAGCAGCCCACGCCTCCTCTGACCAGCCCTCACCTCAAGGCGGTGTTCTCCATGCCGTTCGGCGTGTTGTCCTACATCCTGCTGTGGTACACTCCACAAGACACCATGTCCGCTGGTTTCAGCTTCACATGGTACTTCACCATGTACTGCCTCTTCCAGACCTTCATGAGTATTTATATCCCAACCCTCGCCATCATCGCCTGTGTCCGCAGTAATCTCCCCGTCTACGTTCTGATGTCCATCAGTGCCGGGTCCAGCCTGGCTGCCCTGTACCTGCTTCCATGGTCCATGCTGCCAGATGTGGTGGATGACTTCAAGGTGAAGAACCCGACCTGCAAAGACCTGGAGCCTCTGTTCTACTCCTGCTACGTCTTCTTCAACAAATTCGGGGGTGGGATGTCCCTTGGCATCTCCACTCTAGCTTTACATTTTGCAGGGTACCAGCCAGGCGCCTGCAAGCACAACGCGGCGGTGATCACCACGCTGAGGGTCCTGTTTGCCCCGGTCCCCATCGGCCTGCTGCTGGTGGGCATGCTCTTATTCTACTTCTACCCCATCAACGAGGAGCGCCGCCAAGAGCTCAAGAAGGAGCTGGAGAAAGCCCAGGAGATGGAAGAAAGGACAATGGATGTTTTTAGTCTTAGCAAAGTGCAGGGGTTAAACTGGCCCGGGGCCGTCCGGGGCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU35021 lncRNA upstream 155710 40051890 ~ 40060205 (+) True G27973
TU35006 lncRNA upstream 212215 39957987 ~ 40003700 (+) True G27960
TU34902 lncRNA upstream 611087 39604612 ~ 39604828 (+) True G27881
TU34873 lncRNA upstream 623504 39580779 ~ 39592411 (+) True AMCG00008007
TU34891 lncRNA upstream 673998 39540382 ~ 39541917 (+) False AMCG00008010
TU35105 lncRNA downstream 39704 40277414 ~ 40277687 (+) True G28032
TU35194 lncRNA downstream 426262 40663972 ~ 40721691 (+) False AMCG00008051
TU35229 lncRNA downstream 513765 40751475 ~ 40755976 (+) True G28140
TU35231 lncRNA downstream 520988 40758698 ~ 40759010 (+) True G28141
TU35233 lncRNA downstream 523556 40761266 ~ 40761633 (+) True G28143
AMCG00008037 mRNA upstream 1932 40208137 ~ 40213983 (+) True AMCG00008037
AMCG00008035 mRNA upstream 43079 40171697 ~ 40172836 (+) True AMCG00008035
AMCG00008031 mRNA upstream 101575 40101186 ~ 40114340 (+) True AMCG00008031
AMCG00008030 mRNA upstream 139637 40075226 ~ 40076278 (+) True AMCG00008030
AMCG00008027 mRNA upstream 141805 40062721 ~ 40074110 (+) True AMCG00008027
AMCG00008036 mRNA downstream 3763 40241473 ~ 40247170 (+) False AMCG00008036
AMCG00008039 mRNA downstream 14502 40252212 ~ 40267152 (+) True AMCG00008039
AMCG00008047 mRNA downstream 332122 40569832 ~ 40578430 (+) True AMCG00008047
AMCG00008045 mRNA downstream 370902 40608612 ~ 40624271 (+) True AMCG00008045
AMCG00008048 mRNA downstream 394934 40632644 ~ 40647166 (+) True AMCG00008048
TU35023 other upstream 156529 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 380979 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 711538 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 1507000 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 1779320 38432045 ~ 38436595 (+) True G27551
TU35066 other downstream 3602 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 1755149 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 2868003 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 2909063 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 3054886 43292596 ~ 43301422 (+) False AMCG00008132

Expression Profile