RNA id: AMCG00008040


Basic Information

Item Value
RNA id AMCG00008040
length 591
RNA type mRNA
GC content 0.54
exon number 6
gene id AMCG00008040
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40221367 ~ 40226406 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTGTGGAGGTTTTTGGGACTCTGGCCGGATCTGCCATTCAGGGACAGATAGTGGGAGTGTACCACGCCAGGAAAGCGCAGGCCTGCAACGTTCACAACACCACAGACCTCAGCATCGCAGACCTCGATGCCACCATGTACCAGAACGCCACCTCCTCCATCAGCGACACGCTCCACAACACGAGGATGGCCTATGTGATCGCTGCTGTGATAATCGGGGGTTTTTATTTCCTGTGCTGCATGGTAATGTTTTTGGGCGTGAAGGAGCAActagctcccCTCAGCACCCTGGACAAGCTCCAAATGCCTTACCTGTCTGGGGTGAAGTGTATCGTGAAGCACACCCCGTACATACGCCTGGTCTTTGGTTTCCTGTTTGCCTCCTTGGCTTTTCAGATGGCACAGGGGAATTTTGCGCTGTTCTGCACCCACGCTGCTGGGCTTGGGGCCTACTTTCAGCACCTTGTGCTCATCCTGCTTCCAAATCATTGTAGAGCCATCATCCTTTACTGGCAGCAATCAGAGGAGTCTGGAGGACAGCTGGCACCAGTATTCCTGCAGGAAGCACCTCAGCATCAGGCCATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34987 lncRNA downstream 374323 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA downstream 374323 39842331 ~ 39847044 (-) False G27949
TU34962 lncRNA downstream 429883 39790546 ~ 39791484 (-) True G27927
TU34927 lncRNA downstream 456950 39763930 ~ 39764417 (-) True G27904
TU34831 lncRNA downstream 765509 39455040 ~ 39455858 (-) True G27833
TU35107 lncRNA upstream 41866 40268272 ~ 40273788 (-) True AMCG00008042
TU35109 lncRNA upstream 50757 40277163 ~ 40277647 (-) True G28036
TU35108 lncRNA upstream 52321 40278727 ~ 40288574 (-) False AMCG00008042
TU35176 lncRNA upstream 401371 40627777 ~ 40632764 (-) True G28095
TU35192 lncRNA upstream 433475 40659881 ~ 40663760 (-) True G28110
AMCG00008034 mRNA downstream 83915 40132543 ~ 40137452 (-) True AMCG00008034
AMCG00008033 mRNA downstream 120167 40092723 ~ 40101200 (-) True AMCG00008033
AMCG00008032 mRNA downstream 130166 40077508 ~ 40091201 (-) True AMCG00008032
AMCG00008028 mRNA downstream 159394 40051029 ~ 40061973 (-) True AMCG00008028
AMCG00008029 mRNA downstream 212765 39986928 ~ 40008602 (-) True AMCG00008029
AMCG00008042 mRNA upstream 47146 40273552 ~ 40278906 (-) False AMCG00008042
AMCG00008043 mRNA upstream 63244 40289650 ~ 40298668 (-) True AMCG00008043
AMCG00008041 mRNA upstream 102325 40328731 ~ 40356747 (-) True AMCG00008041
AMCG00008044 mRNA upstream 167672 40394078 ~ 40415758 (-) True AMCG00008044
AMCG00008052 mRNA upstream 443264 40669670 ~ 40677744 (-) True AMCG00008052
TU34865 other downstream 716775 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 1129612 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 1165688 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 1171770 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 2056825 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 789753 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 973083 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 1620527 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 2534598 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 4191468 44417874 ~ 44418196 (-) True G28970

Expression Profile