RNA id: AMCG00008041


Basic Information

Item Value
RNA id AMCG00008041
length 1200
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00008041
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40328731 ~ 40356747 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATCAGAATCACTCGCTGCTGGGGCGCAACTTCTCCCACGATTTTAAGCTGCTAACTCACTACCTGCTGTCTACAACGGAAGGTCCTGCAGCCGCCAACCTGTCCAACGCGACGGGCAACAGCCTCGATGTCAGCACCGACATTTACTCCAAGGTCCTGGTCACCGTGATCTATATTGCCCTGTTTCTGATCGGTTCCCTGGGGAATGCCATCACCCTGTACACTTTAGTGAGGAAAAAGACTTTGCAAAACCTGCAAAGCACGGTGCACTACCACCTGGCGAGCCTGGCGGTGTCCGACCTGCTCATCCTGATCCTCTGCATGCCCATTGAGCTGTACAATTTCATCTGGGTTTACCACCCCTGGGCTTTCGGGGGAGCGGTCTGTAAGGGGTACTACTTCTTGAGGGACGGCTGCTCCTACGCCACGGCGCTTAACATTGCCAGCCTGAGCGTCGAGAGGTACATGGCGATCTGCCACCCCTTTAAAGCCAAAAGCATCATGTCAAGGAGCCGGACCAAGAAGCTGATCAGCGCGATCTGGGTGGCCTCCTTTCTTCTCGCCACCCCGATGCTTTTCACCATGGGGCAGACATATATCGATAACGTTAAAGTCTGCACTACCATAGCGTCCACCTTCACGGCTAAGACCGTCCTGCAGGTTAATGCGTTCCTGTCCTTCATTTTCCCCATGGTTGTGATTTCGGTGCTCAACACCATCATTGCGAATCAGCTCATCCAGATGTTTAAGCAGGCAGCCCAAGACAGCAGGGTCTGCATCATTGGAGGAAACCCCACGATGCTGAGCGTGTCTGTGGAGCCCAGTCGCGTACAGTCTCTCCGACATGGAGTCAAGGTCTTACGAGCCGTTGTAATTGCATTCGTGGTCTGCTGGCTGCCATACCACATCAGACGCCTCATGTACTGCTATGTGACACAGTGGACTAATTTCCTGTACGACTTCTACCACTATTTCTATCTGGTGACCAACGTCCTCTTCTACGTCAGCTCCACCGTCAACCCAATCCTCTACAACCTGGTGTCGTCCAACTACCGGCAGATCTTTCTGTCCACGCTCGGCTACTTCTGCCTGCCCTGCCGGAGCAAGAGGCAGCGGCCGGTCCTCGCCAGGCACTCAAACAGCATCTCCAGCAACCACACCTTCTCCACCAATATGATCAGGGAAACCACATACTAG

Function

GO: NA

KEGG:

id description
K04211 NTSR1; neurotensin receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35108 lncRNA downstream 40157 40278727 ~ 40288574 (-) False AMCG00008042
TU35109 lncRNA downstream 51084 40277163 ~ 40277647 (-) True G28036
TU35107 lncRNA downstream 54943 40268272 ~ 40273788 (-) True AMCG00008042
TU34987 lncRNA downstream 481687 39842331 ~ 39847044 (-) True G27949
TU35176 lncRNA upstream 271030 40627777 ~ 40632764 (-) True G28095
TU35192 lncRNA upstream 303134 40659881 ~ 40663760 (-) True G28110
TU35203 lncRNA upstream 307170 40663917 ~ 40667862 (-) True G28119
TU35228 lncRNA upstream 391559 40748306 ~ 40750443 (-) True G28139
TU35294 lncRNA upstream 626872 40983619 ~ 40984904 (-) True G28190
AMCG00008043 mRNA downstream 30063 40289650 ~ 40298668 (-) True AMCG00008043
AMCG00008042 mRNA downstream 49825 40273552 ~ 40278906 (-) False AMCG00008042
AMCG00008040 mRNA downstream 102325 40221367 ~ 40226406 (-) True AMCG00008040
AMCG00008034 mRNA downstream 191279 40132543 ~ 40137452 (-) True AMCG00008034
AMCG00008033 mRNA downstream 227531 40092723 ~ 40101200 (-) True AMCG00008033
AMCG00008044 mRNA upstream 37331 40394078 ~ 40415758 (-) True AMCG00008044
AMCG00008052 mRNA upstream 312923 40669670 ~ 40677744 (-) True AMCG00008052
AMCG00008055 mRNA upstream 399036 40755783 ~ 40769324 (-) True AMCG00008055
AMCG00008054 mRNA upstream 463102 40819849 ~ 40828516 (-) True AMCG00008054
AMCG00008056 mRNA upstream 490255 40847002 ~ 40848749 (-) True AMCG00008056
TU34865 other downstream 824139 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 1236976 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 1273052 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 1279134 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 2164189 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 659412 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 842742 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 1490186 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 2404257 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 4061127 44417874 ~ 44418196 (-) True G28970

Expression Profile