RNA id: AMCG00008042


Basic Information

Item Value
RNA id AMCG00008042
length 1716
RNA type mRNA
GC content 0.60
exon number 5
gene id AMCG00008042
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40268272 ~ 40288574 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aTTCAACCCCTTGAAGGCTCTGCAGCCGAAACGCCGCTTGCAGCAAATGTTGTCTTCCCCTTCAGCtatGTGCCCTCATATAATCTCTTATCTCTGGGAAGTTTTGAATATTGCAGGTTCATAGACCTAGACCACATACCCATGGAGACAGGGTTTTTGGTTTCAATGCACCAATGTCCTGGAATTCTTTCCCCACAACCATTGGAGCTTCAGAATCGACGCCCACCCCCCACGGCGAGTGCACGGGATCCCTGTGGCACCTCTtctctcagcagcagcagcaactctGGCTCCTGCAAAGGCAGCGATGGCAGCCCCACACCCAGGCGACACATGAAGTATGCGTCCTGCACTGACAACCATGGGATCAAGCCGCCCACCCCAGAGCAGTACCTCACGCCCCTGCAGCAGAAGGAGGTCTGCATCCGGCACCTCCGGGCCAGCTTGAAGGAGACTCTGGACAGGCTGCAGGACCGGGACACTGAGATTGATGAGCTGAAGACCCAGCTGTCGAGGATGCAGGAGGACTGGATCGAGGAGGAGTGTCACCGCGTGGAGGCCCAGCTGGCCCTGAAGGAGGCGCGCAAGGAGATCAAGCAGTTGAAGCAGGTGATTGACACGGTGAGGAGCAACCTGACAGAGAAGGACAAGGGTGTCCAGAAGTACTTTGTGGACATCAACATCCAGAACAAGAAGCTGGAGACTCTGCTGCACAGCATGGAGCTGGCCCAGAACGGCTCCCccaaggaggagggggtgggcgTACTGGCCACAGAGTCCCAAGGTGGCTCTCCAGCACGTTCCCTCACCCGCAGCTCCACCTACACCAAGCTGAGCGACCAGGCTCCAGAGAAGAACGCTAACGACTTCCCCAGCTTCTCCGGGGAAGAGACTATGGACAGTGGCTTTGTGGCCGGGGAGAATGGCACCAGCCGTACGGACCTCTTGGAGCCGAGTTTCCTGTCTGAGGATGCCTCTCTTCTGACGTCCTACACGGCCGGCTCCCGGCTTGCCCACAGCTCCACCTACGAGAAGCTGGTGAGTGGCCAGAGCAGTGTGGAGATGggcagcaacaacaaccaccTGGCCAGCCACCTCTTCTTCCAGGACCTCAAGGAACAAGCCATCCAGACGGACTTTGTCCACTATAACCCCGACCTGGACACCATCATGGAGAAGGTGATGAAGTCTCAGGCCTGCAGCCCGACTTACACCTGGATCTCTGAAGACGCCGAGGACATGGACACCACGCACATGGACCTGGGCCAGACACTGCCACCCTCCTTTACCTGTGAGGCGGACCTCGCCCCTGCCCACCCCAGCACTGCGTCTATGGGGACGGACACTGACGGGATGGTGGTCGCCCCCCAAACCTGCCAGCCCACCAGCACCAAGGGGCAGCAGACTGCTTCAGAGCTGGTGGAAGTGGTGGaggtggtggaggtggaggaggaggaggaggtggacaGTGGAGAGGTGTCTACAGAACGTAGTCCTCAGAAGAGCTACTGGAGCAGGCACTTCCTGGTGGATCTGCTGGCCGTGGCAGTGCCTGTAGTGCCCACCGTGGCCTGGCTGTGTCGGGGGAATCGCCGCGAGGGCCAGCCCGTCTACAACATCAGCTCCCTGTTGCGTGGCTGCTGCACCGTGGCACTCCACTCCATCCGCAAAATCAGTGGAGGGGGGCAGCCCGTCGCCAGAGGCACGCAGATCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34987 lncRNA downstream 426508 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA downstream 426508 39842331 ~ 39847044 (-) False G27949
TU34962 lncRNA downstream 482068 39790546 ~ 39791484 (-) True G27927
TU34927 lncRNA downstream 509135 39763930 ~ 39764417 (-) True G27904
TU34831 lncRNA downstream 817694 39455040 ~ 39455858 (-) True G27833
TU35176 lncRNA upstream 348871 40627777 ~ 40632764 (-) True G28095
TU35192 lncRNA upstream 380975 40659881 ~ 40663760 (-) True G28110
TU35203 lncRNA upstream 385011 40663917 ~ 40667862 (-) True G28119
TU35228 lncRNA upstream 469400 40748306 ~ 40750443 (-) True G28139
TU35294 lncRNA upstream 704713 40983619 ~ 40984904 (-) True G28190
AMCG00008040 mRNA downstream 47146 40221367 ~ 40226406 (-) True AMCG00008040
AMCG00008034 mRNA downstream 136100 40132543 ~ 40137452 (-) True AMCG00008034
AMCG00008033 mRNA downstream 172352 40092723 ~ 40101200 (-) True AMCG00008033
AMCG00008032 mRNA downstream 182351 40077508 ~ 40091201 (-) True AMCG00008032
AMCG00008028 mRNA downstream 211579 40051029 ~ 40061973 (-) True AMCG00008028
AMCG00008043 mRNA upstream 10744 40289650 ~ 40298668 (-) True AMCG00008043
AMCG00008041 mRNA upstream 49825 40328731 ~ 40356747 (-) True AMCG00008041
AMCG00008044 mRNA upstream 115172 40394078 ~ 40415758 (-) True AMCG00008044
AMCG00008052 mRNA upstream 390764 40669670 ~ 40677744 (-) True AMCG00008052
AMCG00008055 mRNA upstream 476877 40755783 ~ 40769324 (-) True AMCG00008055
TU34865 other downstream 768960 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 1181797 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 1217873 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 1223955 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 2109010 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 737253 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 920583 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 1568027 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 2482098 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 4138968 44417874 ~ 44418196 (-) True G28970

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00070525 True 819 mRNA 0.55 4 NC_007119.7 49149907 ~ 49155185 (+)