RNA id: TU35107


Basic Information

Item Value
RNA id TU35107
length 5517
lncRNA type sense_over
GC content 0.41
exon number 1
gene id AMCG00008042
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40268272 ~ 40288574 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTACAGAACGTAGTCCTCAGAAGAGCTACTGGAGCAGGCACTTCCTGGTGGATCTGCTGGCCGTGGCAGTGCCTGTAGTGCCCACCGTGGCCTGGCTGTGTCGGGGGAATCGCCGCGAGGGCCAGCCCGTCTACAACATCAGCTCCCTGTTGCGTGGCTGCTGCACCGTGGCACTCCACTCCATCCGCAAAATCAGTGGAGGGGGGCAGCCCGTCGCCAGAGGCACGCAGATCTAACCACAATTAACACCATTACCACCCCCCcatcatccctctctctccacccacCCTCTCCACCTCTGCACTGAGACACCAGGACTGACAACATGCATTGTGCTTTGACACTGATTGTAGCTCGTCCTGGTGGACAGGGAGTCGGGTTGGTCTGTTGGTTTAACACTATAGCAAAGGGTAATCTGTCTGGCTATTCCCTCTGTGCTCCCTCCTGCAGCGTGGATCTCATTTGGCATTGGAAATCGTTCCTACAAGGTCACGGGCAGCGGACTCTTACCGCTGTCTCCTGGTGTCAGCTTTCTTAATAAGATGAGATTAATATCGTATCTGTGACACATCAACCAACACCTAAGGCCTAAAATCTAGGAAGTGAATGCAGGGGTTAGGGTTTCTGGATGATAATTCTGCTGACCATGATCAATTGATTCCAATGCATTGTCCCTAGCAACTGAAAAAGATTAATTATTATccaatatgaaatattaacaaACGGAAGACCCTGGCCCTAGTGTCTATGAAAGGCAAACAAGGTGCCGTAGATCACAAATTCCCTTCACAACGTTTATACAGCATAACCTACACATCAGTGCCTGAGGAAGAGTGGATATTTGTATGAGCTTTTACTAATTACTCAGTCATGTTTTTCAATGCAGTATAGCACAGTACAACCAAAAGCAATGTGAGGGGGGCTAGAGTAATGGTTAGTGCCTACCTACAGATGCTAGCCTTGTAACCGATACCTGGAATTGAGTTTTATAGTGTCATTGTGCACCCACTTAGTTAGACAAGGATTATAGTTCCTGTTttgagaatttatttatttatttattttgcattatctGACCTAGAgtgttttgcatatttcatATGAATGTAGTACTGTACAAGGTAGTACTGTATTGACTGTTTGGTGATATGGCAGGTGATTTGCATATTTTGATTGATATTTCGGCACTGAGCAGCTGTTTTGAATTGAACACGGCTGTTATCACTCGTTTAGCTCTGGAGGCCTCCTGTCCTGGTCTCTGAAAACCTGGTCCCGGAGAGCACCACAGACTTCAGTTGAACTGCTCCAATTAGATGCTTAATTAGTGACAATGATTGTGATCTTCATTTACTGCTTGTTGGCAGCTCATGACCGAGGAAACCTCTGCTCTGTTCTGGGAGAAGATGTTCAAACTAACGGGTTAAGAACAGTAACGACACCAGAATGGAAGAGTCCACAACAGACAGGACTACCTGTCCGTTATGTAGCAAATACTGCACAAAAACTGCCAGAGAACCACAGGGGGTAGGAAAACTAAATCTGTGCTTAATATGTAGTAATGATAACAATTCTAGATGGATAGTGAGCACTTAGATCTGTTACgggttatatatttaaatttatacataaataccTGGTGAATTGACAAGCCAACTGAACtggattatataaaaataaaagttaaagaaaatggTAGTAATTCAACAGCTCCATTACACAGAAGGCATTTTCGGTTTGCTGGGCTCTGTGATGTGCTGTAGTTTGCCGTTTCATCAGAAATCGCTGCCGAACGCTGCTGAGTCTGCAATCCCCCCCAGAGCGAGTCGGCGGTGCGCGGAGCCCGAGAGGCCCAAAGGCAGAGCGACAGGAAACGCTTCTGGGGAAAATGCCAGCAGCTTGCTGCGTCATGGAGTCATTTACGAAATGTCTGCAGagctttctttttatatacaggtttaaaaaggttaaaatctCTGCGTAGATCTTGATTTGGAGTCTAATGAAACTTGTGGGAATGGGAAGACTGATGCTCTTTGCTATATCTGTTTAATTGTTATAAGtgaacttgtttttcttctgaagtTTTAGCACCCTTTATTTGatggtttgtttggtttctttttctttgtatgtttaaagGTATCACCTTGTATGGAGTCGGAATCCCCCAAAGAATATAATTTGAACTTTCACACTGGCCAAAATCtgatatattaatattactgaaatccaaaattaaataaatcacaattaataaaacatgtacacagtgtatgatattaaaaaaaaaaaaaaaaaaaagtttggatACACCAAATATTGTTCTTCAAAACCTTTCTTCTATTGCACTataattcactttaaaaaatTATTACTTGAAGTTTAGATTGCTTTGCATGCCTCAAAAATGGATGTCTCTACATTTCAAAGGGGCagcttatttttatgtatgtaaagtAAATCCAAAAGATTTCAACtattaatgtactgtaaaacagtggttaaaattaatattataaatgtatgaaatagattaatttattttgtagctgTAATTGCACAGAATATTTAATCTGTCATATATGGTTTGTCTCCAGTATtctgtgttacaatatatacCATGCAGAGTTATCCTCTCTAAACACAAACATGGTTGCCTTTTTGTCACTTTTCTTTGATGTTTGCTCTTCTGAATGTGTGACACGTTATCTCTGTTTAGAGGCTTGACAATCCTTTGTGCTGCAGCTTTgtgagttttttcttttgaggtGCACCTGGCCGTTGTGTCTATTAACAATCTGGACCCATCGCCACCAAACgctgtcaaataaaataaactggatagaGAACGAACAGCATCCAACTGGGTAACGCGCAGTTTGTCGTAACGGAAAATCACGTGTCCCAAGATACTGTGTGTCAGACTTGCTCATGGTACATTGCAATTCACATCCCTTCTGTTACCAATTTTTACTTGAATCTGTGTAAATGTGGTAAAAAGCCATAGTCTAGCCCAGGGCCAGCTGAGCGTGCCTCTTCACATCCATTCCGCTGCAGACGATAATTGCTGCATACTTTTCTCCACACCAATTAAATCATTCAAGACTTGCAGTCAAGCTCTTCAGCTGACTGGATTGGCAGAGACACTCTTTTCAAGCCCTGTCCAAGCCAAACTGGTATTGGTAATGCAAACCCTCAGCCTGCTTATgagaacaaaaatgaatgagCAGCCAGTTATAGACTGCTGCACTGTCTCTTCCACCCACAGCggacaagaaatgaaaaaaaaaaaaggcctggTTTCTCAGACCAGGCTGGTAGTTTGTGTTTTGGCTTTAGAGCGGCCAGCATGACGCCGCAAGGAAAACCAAAGTCTTGTTTGAATACCAGGCCTAGAATAGACCACAGCGAGGGGACTTTGAGGTGTGTCGGTGAGGTTTCCATTTCTGCCAGCAGATGGCACTAACCTGTAAGTAAACATGAATGTGTGGTAAGCTCTTGTGCATCTGGTCCAGGTAGCGCAGGATCGCTATGGTGGCTCGTTACTGATATCAGCCACCGCATGTGTGACTAGTCTGAGCAAGAGGGGCAGCACTGTGAGCGCCCTCCAGCCCATGACCACTCTGTCTGTTCTAGCGCTTCTTAAATTGACTCTGTCCCCTAAGTGTTACTAAGCACTTGAAATTCAGAAGCAGTCACTAACTGCAATCACTTGTCAGAGTGGCCACGCTGTCCAGTGGTCTGGTTAGGTGCCTTTAGGAATGCCTGATtgtagaattgtattttttttctgttcttgtttgttCTGATCTTGCTTCTTCTACGGACAGTGGCACCCCACGACTAGACAGGTCTGTCTGTACGAGAAACTGGGCCACGGTGTATTAGAAATCTGTGATGTGTAATGCATTTGcatactggaaaaaataaaaataaagaacatgtaAAAATCATTCCCTTCAGCCCTACTCTTTCTCCACATGCACAGATCAAGAATGATGCTGGTTGGGGGTGTGAAGTGTGGGGGGGTGATGTAGCAGCACTGATTGTATATCAAGTACAAATTATCCCCAGCCTAAGAATGCATCTGTAGCTCACTAGcagaaatgtgaataaaataaaatagtcatGGATGAAACACTAGGTCTCCACAAGTTATTGAGCTGGCAGGTTTAATATCTGTGATTTGAATAGTAATTTATACCACATTTCAATCTGCTAAGTGAGTGTAAAAGTCAATAATCATTCATAGTGGAAATCGAGGAAATACTATCTCTGTTTCATATATAACAATTTCTAGaggtgtataataataataataataataatagtgtctGTCTAGTGAATAAATTGTTTATGATTTAGTGGGCAGGGGGTATGGAGGCACTGTTCAATGTCATGGGTGTCTCCAGTGCTGGTCTCGGAGATTTCATTCCAGCCGAGCCCTTCATGACTACATTCACAGGCTTTGAAATCGGCCATTGTCCTTTTATTTCCCTATCTGTATGCTCAAGACTTTATCCATCAGTGGGCTCTGACAGTGGGAGTTTCGTTTTtttctaattgtgtttttagttttaattctACCTGTGCTTTCTCCCCAGCTGCcgaataaatactaaataactAGCTTAATCATTATGGTCTGCACACCCAGTCAGTAAAAAGATCAGTTAGCGGTCATGTCATCTTCCTAgaagtttgtattatttgtgtggatttgtactgatttttttttttttttttacaaaagtgCATGTTTTCACTGTGCtacacaaaactgaaaacgtacaaaaaaaacaactgctcAATGTCACGTGAAAAACTATTTACCACGTGTAATAGAAGAGTTTGGAGGCTGAATGTGATGATCTCTTTCTAATAGGGTTCCTTTCGTTTTCTTCTTATCCTGTGGATGAAAAGCAACTGTCTTACCATTTCACAGCAGCTCTAGTTACTTCATTACAAGCCACTGGGATTATGTGCAAACCAGCTGCATCCAATTCTGCCGGGGTACTACTTTAACAAAGCACTGCAATGTTGTAAGACAGAGTATGTATTGAAGGCTTATGAAGGGAATTTATTGTTGATGAATGTTATTGGCATTATTCCCCattctgtcaaaataaatggGTTTTGGTTGTGTAAAGTGTAAAAACTGAGACCCACCATTTCTTTAGGAGTCAGGCTCTGTCCCTTGTTAATTCAGTGTACacctgtgtggctgtgtgtctgtatctgagATGTGTCCTGACTTCTTTATCACTGGCTTTGTCTGTGAATGCGTTTGTACCCAATGTGTAAATGGAAATGGAGTGGAGAATAACAAGGTGCAGCTAAAGTCTGTaaacataactaaataaaatgggGGAAATGGCAATACTAGAGTGTACAGACATATCCATTCATTTTGTACCATTTTCACTTCACCATGCTGTATAAAGAGAACCAAAAGCCTATATATTAAACAGCATGAAAAACAGATGCTgtctcttttgtatttttttggttttgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34987 lncRNA downstream 421228 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA downstream 421228 39842331 ~ 39847044 (-) False G27949
TU34962 lncRNA downstream 476788 39790546 ~ 39791484 (-) True G27927
TU34927 lncRNA downstream 503855 39763930 ~ 39764417 (-) True G27904
TU34831 lncRNA downstream 812414 39455040 ~ 39455858 (-) True G27833
TU35109 lncRNA upstream 3375 40277163 ~ 40277647 (-) True G28036
TU35108 lncRNA upstream 4939 40278727 ~ 40288574 (-) False AMCG00008042
TU35176 lncRNA upstream 353989 40627777 ~ 40632764 (-) True G28095
TU35192 lncRNA upstream 386093 40659881 ~ 40663760 (-) True G28110
TU35203 lncRNA upstream 390129 40663917 ~ 40667862 (-) True G28119
AMCG00008040 mRNA downstream 41866 40221367 ~ 40226406 (-) True AMCG00008040
AMCG00008034 mRNA downstream 130820 40132543 ~ 40137452 (-) True AMCG00008034
AMCG00008033 mRNA downstream 167072 40092723 ~ 40101200 (-) True AMCG00008033
AMCG00008032 mRNA downstream 177071 40077508 ~ 40091201 (-) True AMCG00008032
AMCG00008028 mRNA downstream 206299 40051029 ~ 40061973 (-) True AMCG00008028
AMCG00008043 mRNA upstream 15862 40289650 ~ 40298668 (-) True AMCG00008043
AMCG00008041 mRNA upstream 54943 40328731 ~ 40356747 (-) True AMCG00008041
AMCG00008044 mRNA upstream 120290 40394078 ~ 40415758 (-) True AMCG00008044
AMCG00008052 mRNA upstream 395882 40669670 ~ 40677744 (-) True AMCG00008052
AMCG00008055 mRNA upstream 481995 40755783 ~ 40769324 (-) True AMCG00008055
TU34865 other downstream 763680 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 1176517 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 1212593 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 1218675 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 2103730 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 742371 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 925701 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 1573145 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 2487216 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 4144086 44417874 ~ 44418196 (-) True G28970

Expression Profile