RNA id: TU35108


Basic Information

Item Value
RNA id TU35108
length 299
lncRNA type sense_over
GC content 0.55
exon number 3
gene id AMCG00008042
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40268272 ~ 40288574 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctataCTAGACCAGTGGAGAACTGGCTGCCAGTGACCGAAGAGCCCTCCCAGCAGTCTGTAAGAGGCTGTCCCCATGTCCGCCCCTCCCAGCAGACGCACCTCGGCTGGATCTCGCAGaTTCAACCCCTTGAAGGCTCTGCAGCCGAAACGCCGCTTGCAGCAAATGTTGTCTTCCCCTTCAGCGTGAGactaacttttatttttgtcacgCACACGCTAtcaagcagacacacacatggtTGAACAAGCACTCCCCCAGACGCATATACTGTCAAGTAGACGCACACATGGGCGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35109 lncRNA downstream 1080 40277163 ~ 40277647 (-) True G28036
TU35107 lncRNA downstream 4939 40268272 ~ 40273788 (-) True AMCG00008042
TU34987 lncRNA downstream 431683 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA downstream 431683 39842331 ~ 39847044 (-) False G27949
TU34962 lncRNA downstream 487243 39790546 ~ 39791484 (-) True G27927
TU35176 lncRNA upstream 339203 40627777 ~ 40632764 (-) True G28095
TU35192 lncRNA upstream 371307 40659881 ~ 40663760 (-) True G28110
TU35203 lncRNA upstream 375343 40663917 ~ 40667862 (-) True G28119
TU35228 lncRNA upstream 459732 40748306 ~ 40750443 (-) True G28139
TU35294 lncRNA upstream 695045 40983619 ~ 40984904 (-) True G28190
AMCG00008040 mRNA downstream 52321 40221367 ~ 40226406 (-) True AMCG00008040
AMCG00008034 mRNA downstream 141275 40132543 ~ 40137452 (-) True AMCG00008034
AMCG00008033 mRNA downstream 177527 40092723 ~ 40101200 (-) True AMCG00008033
AMCG00008032 mRNA downstream 187526 40077508 ~ 40091201 (-) True AMCG00008032
AMCG00008028 mRNA downstream 216754 40051029 ~ 40061973 (-) True AMCG00008028
AMCG00008043 mRNA upstream 1076 40289650 ~ 40298668 (-) True AMCG00008043
AMCG00008041 mRNA upstream 40157 40328731 ~ 40356747 (-) True AMCG00008041
AMCG00008044 mRNA upstream 105504 40394078 ~ 40415758 (-) True AMCG00008044
AMCG00008052 mRNA upstream 381096 40669670 ~ 40677744 (-) True AMCG00008052
AMCG00008055 mRNA upstream 467209 40755783 ~ 40769324 (-) True AMCG00008055
TU34865 other downstream 774135 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 1186972 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 1223048 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 1229130 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 2114185 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 727585 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 910915 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 1558359 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 2472430 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 4129300 44417874 ~ 44418196 (-) True G28970

Expression Profile