RNA id: AMCG00008043


Basic Information

Item Value
RNA id AMCG00008043
length 1919
RNA type mRNA
GC content 0.42
exon number 11
gene id AMCG00008043
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40289650 ~ 40298668 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTTACACACAGCTTTTCATGTCCAAACGGGCACCGTTGTCTAAAATATGGCTTGCAGCTCACTGGGAAAAAAAGATAACTAAAGCTCACGTGTATGAATGCAATCTGGAAACCACGGTTAAAGACATACTTTCACCAAAAaTAAAAATTGCATTGAGAACATCAGGGCATCTGCTTCTGGGAGTGGTAAGAATATATTCCAGGAAAGCCAAATACCTCCTCGCAGACTGCAGTGAAGCTTTCGTGAAGATTAAATTGGCCTTTCGTCCAGGTTTAACAGACCTCCCCAGTGCCAACTTCGAAGCAACATATAAAGCTATCACTTTGGCTGAGGACTTCCAGGATTTTGAATTACAGCTGCCTGATGTCAATGCCATTGAAGTCACCGACCACTTCACTCTGAACCAGAGCCGGACTGAAGATATCACACTGAAAGAGGATTATGGGAATAGCTTTCTTATATTTGATGACAACTTTGGAGATGAGATTCGGCTGAGACAAGGCGGCCTCTTTGACGAAAGCGTGCGCATGAGTACAGACGAGTCTCTCCTGCCCAATATTGTTCTGAATAATGGTGAGGATATTCTGCAAACAGACGTGTCAGCAGAGAAGGAGGATCAACAAAATATACCCCCTCCAGATACCAATAATAATGACCGGCAGAGTCCTAAGCGCATAGAGGAAGGCCCAGGGATAAACGAAATGACGCTGCTGGACAACGCAGAAGAGGCGTTCACGCTGGAACCGGTCCCTGTGACTCCCACTtctgaaagaaagagagggaagaggaagaggagactGGTGGTGGATCACGCTAAGGAGCTGTCGAATAACGCCATTCGGGGTCAGATCTCCAACTGCTCTGACATCGTCGGCCTCCTGGTCATTGCCCCGCCCACAAAGCAGCTGATGAGATGGAAAGAGATGGGAGGAGTGGATAAGCTCTTCACGAGCCCGTGCTTTACTTTGCTAAATAGTCAGCTACTTAAGAAGACGGTGATGAACATGTTCCTGAAGGTCCCAGTCTACTACAGACGTCTGCAGTACAAGATACTAGCAGAGGGCGAGGAAAACGTATCAGAAAGCACTTTCCCAGAGCTGCCCTCGGAGGACTCCATGCATGTTCATCCTTCAGCAGGGATGGAAGCTCAGTCCGAGCAGAAACAGGACCACGACGGGAATGCGGTGTTCAGTTTGCACAGACTGTGTCGAGGTGACAGCCGTAAACAGGCTGCTGCCAAGTTCTTCATCTTTTTGGTATTAAAGAAGCAAGGAGCTATTGGTCTCAATCAGCATGAACCTTACCAGGATATTCTAGCCACACCAGGACCAATGTTTTATAAGTTGTAATTGAAGTGAGATATTTCTGTGCAGTGTCCATGGGCACACTAATGTAACACTGTGGAAACTTCTTTAGAGTTGGTCTTGGATGACTCTGTGTTGGAGCTGACCTCAAGGAACTAGACTTGTTTTTCATAGCTGGACAAGTGCGATTGCTCATAAAGTAAATGCTAGTTAACTAACACTTATGTATTTGCCTGAGGCTTCCTAAAGAccttatttgattttaaatagtattttgattagcataaaaatgtgtatttgtattaatattagtttGGTCATATAACCAAATATTTTTAACTCCTCCTAAAGTAAATACTAGGAATACATGTTATAGCCTGAAAACATCCTGTACAGTCTGATTAGTTTGTAGACACATATATTGTTCTCCATGCTGATTTCAGTACTTTCAATACACTAGAGTTGGCTAAACCATTTTGATATTtataacattcatttttttaatgaatacattcagtCTTGTTATGTTATATGTGTTTTGTGAAAAGATGTACAGTTGATTTTCTATcagtgttaaattaaatgttgaattaaaatGAGTATGACTTTCA

Function

GO: NA

KEGG:

id description
K06670 SCC1, MCD1, RAD21; cohesin complex subunit SCC1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35108 lncRNA downstream 1076 40278727 ~ 40288574 (-) False AMCG00008042
TU35109 lncRNA downstream 12003 40277163 ~ 40277647 (-) True G28036
TU35107 lncRNA downstream 15862 40268272 ~ 40273788 (-) True AMCG00008042
TU34987 lncRNA downstream 442606 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA downstream 442606 39842331 ~ 39847044 (-) False G27949
TU35176 lncRNA upstream 329109 40627777 ~ 40632764 (-) True G28095
TU35192 lncRNA upstream 361213 40659881 ~ 40663760 (-) True G28110
TU35203 lncRNA upstream 365249 40663917 ~ 40667862 (-) True G28119
TU35228 lncRNA upstream 449638 40748306 ~ 40750443 (-) True G28139
TU35294 lncRNA upstream 684951 40983619 ~ 40984904 (-) True G28190
AMCG00008042 mRNA downstream 10744 40273552 ~ 40278906 (-) False AMCG00008042
AMCG00008040 mRNA downstream 63244 40221367 ~ 40226406 (-) True AMCG00008040
AMCG00008034 mRNA downstream 152198 40132543 ~ 40137452 (-) True AMCG00008034
AMCG00008033 mRNA downstream 188450 40092723 ~ 40101200 (-) True AMCG00008033
AMCG00008032 mRNA downstream 198449 40077508 ~ 40091201 (-) True AMCG00008032
AMCG00008041 mRNA upstream 30063 40328731 ~ 40356747 (-) True AMCG00008041
AMCG00008044 mRNA upstream 95410 40394078 ~ 40415758 (-) True AMCG00008044
AMCG00008052 mRNA upstream 371002 40669670 ~ 40677744 (-) True AMCG00008052
AMCG00008055 mRNA upstream 457115 40755783 ~ 40769324 (-) True AMCG00008055
AMCG00008054 mRNA upstream 521181 40819849 ~ 40828516 (-) True AMCG00008054
TU34865 other downstream 785058 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 1197895 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 1233971 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 1240053 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 2125108 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 717491 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 900821 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 1548265 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 2462336 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 4119206 44417874 ~ 44418196 (-) True G28970

Expression Profile