RNA id: AMCG00008047


Basic Information

Item Value
RNA id AMCG00008047
length 2462
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00008047
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40569832 ~ 40578430 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATAACTTGCAGTAAAGTTGTCCCGGCCAAAGCAGGGAGAACAGTTATATCCGAGATAATCAGCGCCAGCAACTATCTGCAGATAGGAGAGCTTGGTCACCGTTTACGAAGAAGTCCGTCCAGGTTTCCCAAATTGGACTTATTCTGCTGACTTTTCGTTCTAccttatatatatgtatatatatccattttttttaaacaagagcACCAACGAATTTAGCCGCATTCCGGGATCTGTGCGTCCATTGACGAGATTATCATTACCAGCAAAGTTGTTGATTGTGATTTAAACGGAGGGATTTCGGGGCTCGTCCGGCACCACCGAGGCGCAGACTGTCCGAAAAGTGGCGCACACACCTGCGGGGTTGGGAAGCGCTCCGTCTGAACGGGAACCGACGTGGATCCGGCTCGACAACCGACAAACCCGCACTAATAACCCACACAACAAGTAAGGGGAGCTCGCAGCACCATCTCTACAATGTACCAGAGCCTGGCTTTAGCTCCCAACCAGTCTCCTTACGCGCACGACACGGGGAACTACATCCACTCCTCGGCGGGCTCACCTGTGTACGTGCCCACGACCCGGGTGCCATCCATGCTGCCCACCCTGCCCTACCTCCAGCCTTGCGACTCGGCGCACCAGTCGCACACCTTGGGCAGCCACCACGGCTGGCCGCAGGCGGGCACGGACACGTCGGCGTTTAACCCCAGCAGCCCCCATCCACCGCCCGGATTCTCCTACTCCCACAGCCCCCCAGTaagcagcagcactgggaggGAAGGGCCTTATCAGACTCCGCTGGTCATCAGCAACGGCGCCCGGGCGGAGCAGTATGGCAGCGCCCTGGTGCGCTCGGTCGGTGGATCTTACTCCAGCCCCTATGCCACCTACATGGGCCCGGACATGGCATCGTCCTGGACACCTGGGCACTTCGAAAGCAGCATGATGCTCCAGGGCAGACAAGCGGGGCTGTCCGGACGGAGGTCCAGTCTAGAGCTGTTGGAGGAGTACCCGGGCGAGGGCCGCGAGTGTGTGAATTGCGGGTCAATATCCACGCCGCTGTGGAGGAGGGATGGCACCGGCCACTATCTGTGTAACGCCTGCGGGCTCTATCACAAAATGAACGGCATCAACAGACCTCTCATTAAACCACAGAAACGACTGGTGAAGTGGAGAGTAAAGGTCCCGAGACCTTTGGCTATGAAGAAAGAGAGCATACAAACCCGGAAAAGAAAACCGAAGAATGTTAACAAATCGAAAACATCATcggGTTCCTCGGCTTCTGGTACGAACTCCCCTTCTTCAGTCTCTCTGTCTGAAAATGCCTCGACTATAAAGAGCGAGCCGAGCATGGCTCCGTCTCCCTTCGCAGGTCAAACTGTGGTGTCTGTGTCTCAGGCTTCATCCCAGTTAGACAATCTAAACTCCGGACATCCGGAAATTAAATACGAGGATTACCACTTCACTCCAGCTTCCATAGCTCAACAGAACGGACTTTCTGTACGGCAGGACTCATGGTGCGCTTTGACACTGGCGTAAAGTCTGGACTTCCTCTTCAGTTTTCAGGCTGTGTTCTGGAGAAAGTCACACAAATACTACCTATGGACTTTTGCGAGCGACGGGGGAGAATTGTTGATACATGTAACTAAGAACACATTTGTATGGGTTATTGATGCAATTCTTTTATGACCTCTGCATGGTACATGGTTTCTGTAGAAATCAACCACTCAACAGGCTGTTGTCGGGAATATTTATAACTGtaccaaaaatatgttttacctCTTGTGACCCGATTCGATCATATTCCAAAAGCTACAGATTGAGACAAGAATATACAAAGTGCGTAAAAATCAGTGCCTTATATTCACTAATATATTGTATCATGAGTCATAGAGGtgtaaaagaaaagacaggagtgacagaccaaaaaaaaagatgaatggcttccaggtgattttttttttttttttttttttacagtatatcTGTATGACAATCTAAGTGCAATGATTCACTTTTCACAAATAGATGAAAAGGGGACACTATTaataattttgaattttgtttgaaTATGTATACCTaaatttatttgttgtattgtaaGATGTTATTCCTGTGAGggaatttaaatgttattttattgcttttgagaggaaaaaaaaaaaaagttaagttcCAGAATCAAGAATTATTTTGGGGCGGCTGTCTTTGTTTCTACCGAAGCTCTTCGAATTCTAAATCATGGAGAGTATTTAGAGCATAAGAAACTAAATCATCACTTTCTTTCCATGATAAAGGTTGTTGAAAAATAAGGAACCacccttaataaaaaaaaaatagaaggaaaaaaactacattttgcggtaatttgttttgttgatatAGTGTTTGTTTTACCGGTAgagatttttagttttgttgtttgctaTCGATTGCTTTTCCCACTGCATTTCACAACCCC

Function

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0001706 endoderm formation biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0031016 pancreas development biological_process
GO:0048538 thymus development biological_process
GO:0060972 left/right pattern formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0048618 post-embryonic foregut morphogenesis biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0001889 liver development biological_process
GO:0030878 thyroid gland development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005515 protein binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K17896 GATA5; GATA-binding protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35105 lncRNA upstream 292145 40277414 ~ 40277687 (+) True G28032
TU35021 lncRNA upstream 509627 40051890 ~ 40060205 (+) True G27973
TU35006 lncRNA upstream 566132 39957987 ~ 40003700 (+) True G27960
TU34902 lncRNA upstream 965004 39604612 ~ 39604828 (+) True G27881
TU34873 lncRNA upstream 977421 39580779 ~ 39592411 (+) True AMCG00008007
TU35194 lncRNA downstream 85542 40663972 ~ 40721691 (+) False AMCG00008051
TU35229 lncRNA downstream 173045 40751475 ~ 40755976 (+) True G28140
TU35231 lncRNA downstream 180268 40758698 ~ 40759010 (+) True G28141
TU35233 lncRNA downstream 182836 40761266 ~ 40761633 (+) True G28143
TU35274 lncRNA downstream 399224 40977654 ~ 40978428 (+) True G28174
AMCG00008039 mRNA upstream 302680 40252212 ~ 40267152 (+) True AMCG00008039
AMCG00008036 mRNA upstream 322662 40241473 ~ 40247170 (+) False AMCG00008036
AMCG00008038 mRNA upstream 332122 40215915 ~ 40237710 (+) True AMCG00008038
AMCG00008037 mRNA upstream 355849 40208137 ~ 40213983 (+) True AMCG00008037
AMCG00008035 mRNA upstream 396996 40171697 ~ 40172836 (+) True AMCG00008035
AMCG00008045 mRNA downstream 30182 40608612 ~ 40624271 (+) True AMCG00008045
AMCG00008048 mRNA downstream 54214 40632644 ~ 40647166 (+) True AMCG00008048
AMCG00008046 mRNA downstream 70713 40649143 ~ 40661046 (+) True AMCG00008046
AMCG00008049 mRNA downstream 119594 40698024 ~ 40709849 (+) True AMCG00008049
AMCG00008051 mRNA downstream 133049 40711479 ~ 40721745 (+) True AMCG00008051
TU35066 other upstream 322594 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 510446 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 734896 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 1065455 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 1860917 38692739 ~ 38708915 (+) True AMCG00007970
TU35555 other downstream 1414429 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 2527283 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 2568343 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 2714166 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 4444718 45023148 ~ 45036416 (+) True AMCG00008177

Expression Profile