RNA id: AMCG00008049


Basic Information

Item Value
RNA id AMCG00008049
length 4582
RNA type mRNA
GC content 0.43
exon number 9
gene id AMCG00008049
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40698024 ~ 40709849 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTAATAGATAAACGACCAGTTTCACAGAGGTTTGGTCTAATGTGCTTCAAACCAGACAAACTCTTAACATGAACAGAACTGTTAACTCATATGACAGCTACTTCTAGCATGAAATCTAACATTTGAGTTACCAAACTCAGTTCACGGGCATCTTTCTACACATTCCTCTTTACATGTGCATCACATGGAGTTGAGTAGAATGTAGAGCATCCAGAGAGTGAATTAAAATTCTCCTCATTTACTGGGGGACTTGTACAAACGTGATGTTTTCTCTGCCTTGAGAGGAAATCTCAAGATCATGTTACACAGATATGCTTCCCCACTTATACATTGGCATTGGTCATTTGTAGttcttttaaaggaaatgtattttgatattaAAAGGATTTAACATTACCTGGAAACTATAATTAGTCGTGTAAGAATCTAATTAACCCCCTTAATCCTCGTTTTGAAGgtaaaatacaaagcacaaaaGCTTTGCTGTGGTGCGTGTATTAtgcttttacacacacacacacaaaaagtatgttattaaatatttggtCATGTCTGATCCCCTTTTCCTCCTCAAAACATGGTCTCCATCTCTGTTGTCTGTCCCTTTTGTGTGTTTACGCAATGCCATGTTAACATGCTAGCACACGGTTGTGCTTCTGTAGTTTTCAAATAAGGAACCCCTCCCTCTTCTGAATGAACAACAGCTTCATCTCTTTAAAGCCTTCCCTCTATATTCCAGtccattttgtttcatgtaaCCAACAGTATTTATCCTTGGTAGCTGGGTTGCATTCCAGTGGCAGAGAAGACTAGACAGTGGCAGTAATTACAAAAGGAACAcactataaaaatgtaaagttcagCTACCAAAGCTGCAATTTAGAGCTGAAAAGTACACACATAAATTAGGATAAATATACTCAGAACAATAATTACACCATTAAAGCTGGATATGTGCTggtattttttagattttagtttagtttcctGGCACGTCTCCCTGTGCAAACACATTTGCAtgtagttttcagtttttctggtGCTTAAAACaacctttttaatgttttttttgtccatttatttGATTGTGCCCTGAAATATAAACTTCTCTTCATATGCCTCTTCTAAAGCGAACTGAAGTAACATTTTGCTAAATTACACCAAAACACAATGATACACACACcaactcaaaaaaaaaaaaaaaacaaacagttggaGTGTGAGACAAAATTGACACCATTGTGACTGTTGTTCACTTTGAATGCCACAGACCCATGTGGTCAACTGAAGCCTCATTCCCAACAGAAAAACCACTTCCAGGCATTACCCTTTCTAGTCACAGAATTGTCCTAAAAATGACAGAGGTTTGAAACCGTTATTTCATTTGTGCAGACCATTATTTTTAGATCGGTCACAACGTCACTTCGAAACAGCCGCAGAAAACTGGATTATGTGTCTGATCTGCTTATTATCTTAACTGACCTGTTGTTATGccaaaacagaaactgaaaagctGGGATAGTACACTGTTTTCAAGCTGACTGGACAACAGGTTGTGgatcagatgtgtgtgtgtgagagagagagatctgaaaataaaagacCAAATGTCACATCTAGAGCACACACAATTATGCACTTTTCTTCAACTCTTCCCATGTTCATGACAGATAACATCTTTGAAAGGTGTCCTATTTCTCCTTTTATACACCACCGATGGGTGGGGGTTCTCTCAGTCCTGCAGAGGCGGGGAGGGGGGTGGTATCAGATCTCTTGGCAGTATGGTGAGCCTGCAGTCAGCTGATAACACCTTGGGTGGATCTCATGTTGCCATAGAGACCAGAGAGGGTGTTGAATGCTTACACTCTGCAACAAACATTGTGAAGAGCCTTTCCTCTTCAATAAAGACAAGACGCTTCCAATGAGTAGCCTTGAGCATCTCACCAGCAGTTTCTTTTGCCTACTAGATCTACTGCAAGCCTGTATTATTCTGCCACTGGCTGGTTAATGCTCAATCTGATCTGGAGATCCAACAGAAGGTTGATCATGCACTTCCAACGTTGGCTTCCTCCTTTGTTCTGTTGAAAATGGGGAGTATGCTGTCCCTAGTAAAAGCAGCGTCCGGCATTTAACGCGTTAACTACGAACTCGCGCAAAGCATTGTGGGCCGGCGGAAGATTCGCAATGGCCGCTGAAACCATGAGCCTGAAATTTTCAGCTAACATTTGGCTTTCTTTTACAGCTTTCTCGCTCTTACTTTGTCTTTCTAGTGCGGCCGATTTAGTATGGGATGAAAATGGATACATACTGTATTGCCCTTGTATGGGGAGGTTTGGTAATCAGGCAGATCATTTTTTGGGCTCCCTGGCCTTTGCAAAGATGCTGAATCGTACACTAGCTGTTCCACCTTGGATTATATACAGGCATCATGCGCCCCCTTTCACTAATTTGCATGTTCCTTACAGGGATTTCTTCAGGATGGAGCCCCTGCTGCAGTTCCACAGAGTGGTCAGCCTGGAGGAATTCATGGTGCAGCTGGCACCCTCACGCTGGCCCCCGGGCACACGGGTGGCGTACTGCTTCGACGCTGCGGCACAGAGGAGCCCTGACAAGAGGAGCTGTCCTATGAAGGATGGAAATCCTTTCGGTCCTTTTTGGGACCAGTTCAGTGTGGATTTCGATAGGTCTGTCCTCTTTTCAGGCCTTTCCTTTAACACCTACTACAAGCAGCACTGGATCAAAAAATTCCCTCCTTCTGAACACCCAGTGCTGACACTGCCGGGGGCCCCTGCTCAGTTCCCCGTACTGGAGGAGCATGTGGGTCTGCAGCGCTATGTGGTTTGGGCAGACAACATGGTCCAGCAGGGAGAGGGCCACATCAAAGCTCTGTTAGTGCGGCCTTATGTGGGCATACACCTGAGGATCGGCTCCGACTGGCAAAACGCCTGCAAGCTGTTAAAGAACGGGGAGACGGGGCCACACTTCATGGCCTCTCCGCAGTGTGTGGGGTATAACCGCCAAACCGCTCTGCCCCTCACCATGGACATGTGTCTGCCAGACCTGAGGGAGATCAAACGGGCTCTGAAAGTCTGGGTGAAGATGATCAATGCCAAGTCTGTCTACATTGCCACCGACTCGGAGTCTCACAGCAGAGAGATCGAGAAGCTGTTCAAGGGGAATGTCAAGGTGGTGACTCTGCACCCCGAGGTTGCTCAGGTGGATCTGTACATCCTAGGCCAGGCGGATCACTTCATTGGGAACTGTGCGTCCTCTTTCTCTGCGTTCGTGAAGCGAGAGCGAGACATTTATGGACGGCCCTCCTCATTTTTCGGGATGGACTATCCTGGAAAGAGGAAGGATGAACTTTAAGGACTGTCGATAGCTGGAAGACACTGGATGCTGACCCACGGTACACACTGCTGGATGGACAGCCCAAGACCGCAGTGAGTTAGAGCTGTCAGACTGAAGACGCAGGACAGTGCGTGCTGGTTAAATCCTCTCTGTCTCGCCACGTGACACGCCAcaccttttatttaaattgtgcaaCCACAGCTTGGTCATTTGTGACATTTCTGTGCGGCATATTAGCTACACACACTTTGTTTCGCTCTTTGTAACCTGCATATCAAATAGCCCTCTGGAAAACCCACACTGAATACGTTGGGAAGAGAAGTCACTGAGTGCTGGAAGCTTTCTGAGAGGTGTAAACTGAAAGCCTAACTGATCTGTTAGCTTCTAATAATAGTGGTACTGGTCATAATTACCTCACTTCCTACATTCCCTGCATCGCTGTCTTATGGTATTTACAGGAGAGTTAACTGGCTGTTGTCTGGAAACAATGTAAAGcatgaattatattattttaaaataaaaaatgaatgaaaatgttttatacaagCTAAGAAGAGTAGTTTACAGATCCTCTCAATATCAATACtgctaaaatatgtatatatgaagatagggggaacaaaaaaaatctagtaATTTATAAACTCCAGATTGGGAAGACTAAAGTACCTCAATTGCAGCAGATAACCAATCCCAGATCGGTTGTGCAGAATGTGTTCAAGAGAATTCAGAGAAGGGTTTTGGGGAAGTGTCGGGAGTTTATCAATCAAGGGTAATTCATGATGTTAACCAGGACAGGAAGGTGTGTGCTATTACACAAATCAAACACATCAGCGTTCTTGCACTACGGTTTTGAGAGGGATGCGGGACAGGGTCACCCAAGAGCACCACCTGGTCTCTGACCTGCAGTACCCCAAACTTCCAGCAATATATAAGTATTAATCTAGGACCGTGTACATCTAGTATGACTAGAGACtatgaatttatattttgtttttacatgcaaACTTTTGATTGTGTTCAGTCCTACAGATGTTGAGGTAAAAGGACGGTATTTATGGCTTACTCTGCGAACCCCATTAGATTCACAGAGGGGTGCTATTTGTACTACATGAttctggttaaaaaaataaaaatataccacAATTTGTAAAATTCTTGAGCCAATTGAAAGGACTTGTATATTCatattgttgaaatgtttttctattaaaaatacCATGTCATTTT

Function

GO:

id name namespace
GO:0046922 peptide-O-fucosyltransferase activity molecular_function

KEGG:

id description
K03691 POFUT; peptide-O-fucosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35105 lncRNA upstream 420337 40277414 ~ 40277687 (+) True G28032
TU35021 lncRNA upstream 637819 40051890 ~ 40060205 (+) True G27973
TU35006 lncRNA upstream 694324 39957987 ~ 40003700 (+) True G27960
TU34902 lncRNA upstream 1093196 39604612 ~ 39604828 (+) True G27881
TU34873 lncRNA upstream 1105613 39580779 ~ 39592411 (+) True AMCG00008007
TU35229 lncRNA downstream 41626 40751475 ~ 40755976 (+) True G28140
TU35231 lncRNA downstream 48849 40758698 ~ 40759010 (+) True G28141
TU35233 lncRNA downstream 51417 40761266 ~ 40761633 (+) True G28143
TU35274 lncRNA downstream 267805 40977654 ~ 40978428 (+) True G28174
TU35273 lncRNA downstream 306518 41016367 ~ 41017248 (+) True G28173
AMCG00008046 mRNA upstream 36978 40649143 ~ 40661046 (+) True AMCG00008046
AMCG00008048 mRNA upstream 50858 40632644 ~ 40647166 (+) True AMCG00008048
AMCG00008045 mRNA upstream 73753 40608612 ~ 40624271 (+) True AMCG00008045
AMCG00008047 mRNA upstream 119594 40569832 ~ 40578430 (+) True AMCG00008047
AMCG00008039 mRNA upstream 430872 40252212 ~ 40267152 (+) True AMCG00008039
AMCG00008051 mRNA downstream 1630 40711479 ~ 40721745 (+) True AMCG00008051
AMCG00008050 mRNA downstream 14508 40724357 ~ 40745265 (+) True AMCG00008050
AMCG00008057 mRNA downstream 186767 40896616 ~ 40922814 (+) True AMCG00008057
AMCG00008061 mRNA downstream 220263 40930112 ~ 40948904 (+) True AMCG00008061
AMCG00008062 mRNA downstream 240363 40950212 ~ 40959551 (+) True AMCG00008062
TU35066 other upstream 450786 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 638638 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 863088 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 1193647 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 1989109 38692739 ~ 38708915 (+) True AMCG00007970
TU35555 other downstream 1283010 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 2395864 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 2436924 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 2582747 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 4313299 45023148 ~ 45036416 (+) True AMCG00008177

Expression Profile