RNA id: AMCG00008051


Basic Information

Item Value
RNA id AMCG00008051
length 4755
RNA type mRNA
GC content 0.43
exon number 10
gene id AMCG00008051
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40663972 ~ 40721745 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCCCGGGTCCATGTTGTGCCGTTGCTAGGCCGCTTATCTATAGTCTCTCTTGAACAGCGGGGGGAAGCCGAACCGATTCAGTATGGATTAGTCCAGTTTCACAAATCCTGATGCTGTTACTAGGGATGATTTCATTTGAACTACAAGgcTTTGATACTGGAAGACTCCCGCTGTGAAGGCAAGCCATACACATTTCCACCATGTCTAAAATGAAGAGCTCGGAGTCTGTGAAGGTGGTCGTCAGATGCAGGCCGATGAATGACAAGGAGGTTGCTGCCAACTTCGAAAGAGTGGTCTCTGTGGATGTGAAGCTGGGGCAGGTTTCTGTGAAGAATTCCCGGGGAGCGTCCAATGAGCATCCCAAGATGTTTACATTCGATTCAGTTTACGACTGGAATTCCAAGCAGGTGGAACTGTATGATGAGACTTTCAGACCCTTGGTAGATTCTGTCCTTCTGGGCTTCAATGGCACCATCTTTGCATATGGTCAGACAGGAACTGGCAAAACCTACACTATGGAAGGGGTGCGTAATGACCCAGAGAGAAGAGGTGTCATCCCTAATTCTTTTGaacacatatttacacacatatcTAGGTCCCAGAACCAGCAGTACCTTGTCAGGGCCTCATATCTAGAAATCTATCAAGAGGAGATCAGAGACTTGTTATCGAAAGACCAATCCAGGAGACTGGAGCTGAAAGAACGTCCAGACACAGGGGTTTACGTCAAAGACTTGTCTTCCTTTGTTACAAAAAGTGTGAAGGAGATTGAGCACGTCATGAATGTTGGAAACCAGAACCGGTCTGTGGGCGCCACCAACATGAATGAGCACAGCTCTAGGTCACACGCCATCTTTGTCATAACCGTCGAGTGCAGCGAGCTTGGCCTGGATGGGGAGAACCACATCCGGGTGGGCAAGCTCAACCTGGTGGACCTGGCTGGCAGTGAACGTCAGAACAAAACGGGAGCGCAGGGTGAGAGGTTGAAAGAGGCCACCAAGATCAACCTGTCCCTGTCCGCCTTGGGAAATGTCATCTCTGCCTTGGTCGATGGCAAGAGCACCCACATCCCCTATCGTGACTCAAAACTCACCCGCTTGCTGCAGGACTCCCTGGGTGGCAATGCCAAGACAGTCATGGTGGCCAACATTGGCCCAGCCTCCTACAACGTGGAAGAGACTCTCACGACCCTGCGCTACTCCAATCGGGCCAAGAACATCAAAAACAAGCCACGGGTGAACGAAGACCCGAAGGACGCCCTGTTACGGGAGTTCCAGGAGGAGATTGCGCGCTTGAAGGCCCAGCTGGAGAAAAGGtcagggaagaagaagaagaagcgaCGAAGGAGGCACCcgggagaggggggagaggagCTGGGCGAGgacgaggaggatgaggatgacGACGGGGATGAAGAAGCGGAGGAAGACAAGGATGCACCGGATTACTGGCGGAAGCAACAGGACaagctggagaaggagaaaaaagccATTCTGGAAGACCACAGCTTGGTGGCTGACGAGAAACAGAAGCTACtcagggagaaggagagaaagatggaggacatgaagaaagagaaggaggcCAGTGAGATGCTGGCGGCCAAAGTGAAGGCCATGGAGAGTAAACTCCTTGTTGGAGGCAAAAATATTGTTGAccatacaaatgaacaacagaAAATACTGGAGCAGAAACGTCATGAAATTGCTGAACAGAAACGGAGAGAGCGTGAGATGCAACAGCAGATGGAGTGCCGTGACGAAGAGACACTGGAGCTGAAGGAAACCTACAGCTCCCTACAACAGGAAGTCGacatcaaaacaaagaaactgaaaaagCTGTTTGCAAAGTTGCAAGCAGTCAAAGCCGAGATCCACGATCTGCAGGAAGATCACATTAAAGAGAGACAAGAACTGGAGCAGACTCAGAACGAGCTGACTAGAGAACTGAAGCTCAAacACCTTATCATCGAGAACTTCATCCCATTGGAAGAAAAGAATAAAATTATGAACAGGTCCTTTCTCGACGATGAAGACGATCACTGGAAACTGCATCCGATAACTCGGATTGAGGACAATCAGCAGATGATGACCAGGCCTATCTCTGCTGTGGGGTACAAGAGGCCCTTGAGCCAGCATGCCCGAATGGCCATGATGATGAGACCTGAAGCTAGATACAGGGCTGAGAACATCCTCTTACTGGAGCTGGATTTGCCCAGTCGTACCACCAGAGAGTACGAGGAGCCGGCCATTGCCCCGAAAGTAGCAGCAGCGCTGGAAGCTGCTCTGCAGGATGAAGACGAGATTCAGGTGGACGCCTCGACCTTTGAAAGCATCGGCAACAAAAAATCTAAGTCCAGGCCTAAAACAGGAAAGAAGTCTAGCACGCCCACATCTGCATCTAGTCCTGGGAGTTCAGCGAGTCCCCTTTACCCACAGTCACGTGGCCTTGTCCCCAAATGAtcctgacactttttttttttttttaaacatggccCTGTATTAAACTGAACAGGGTCCAAACAGAAACACTGGTATGAGATTTTTTTATGCTTTGTAACTGAAATCTACTATTGCATTTACCTTCTGCATCTTCCCTTTCAATTACTATGACAATTACTaccactttttttgtttggatttgtATTGTTAACCTGTACGATCCCAGGAAGAAAACTGACTCTTGATTTATACTATAATACAATGCAAACTCAAGTCGAACACGACTGGCCTTTAAGTCAGTGATTTGCATTTCAATGAAATGCAACATGAATCCGGGAAAAAGAAAGATctgatctttttttaatgttgttaaaatatgtagTGTAGTCCCCAGAACGTCATGTTCCTGCAATGGCTCCGGTCTTCTTTGAGACAGGACACCTGTGAAAAGCATGAGGCAGTATTCAGAAGAGAAGTTAATCAAATGTTATGCCACTGTCAGCTGGGCTAGACAGTATGTTTCAGTCACATTCTTCAGCCTCTTTTACCTTCAGATACAATTATATTAGTTCAGCAgtccaaaacaaatgtatcagtTCTTAAACCCACGATATATGAATTACTGATAATGCTCGTACTTCCATTAACATTACTTTACTTAAATAACGCTAAAGATGCGACCAGAGTATCCTatattttcctatttttgtattacatcaCATACACTAAATGAAGAAGAGGTGTATTTTGTTAAGTTTGGGATCCAGCTACATGCATGGTACTGTCATTCTGAGCTGTGACGAGCTGAACAACTGTGTTACCTAGAGACGATTTAAGAGAGACAAATATGCACACCAAATATACAAAGACTTCATGGTGCCTTACAGAAAGCTAACCCTTTAGCTCATTTGCATAGCTTGGAAACAACATTGGGTATTGCAGTCTTTAAGGGAAGTAAACATTGGTACATAGGCACCAGACCTTATTTCCACTCAGAATTAACAGTGCCGTTGCCCAGACTAAGCATTCTCTCGTGGTGAATCCAGAATTCTACTTCCGGATCTTTTGAATACTGCCCCTTTCAACCCTGTTTAGTGCCACTGCTTGCTGCTATTATAGGATAGGATACACCTATATAAAATACGTacactatatgtatatacaggAATGGATACTTTGCATAAACTGTGGACAACAAAATGTCTAGAACTAAActttgcaaaataatacattctaatttatattgtttttttgttttgtttatgaagaCAAATGTAGATAcgctttttgttaatttttttttaaatctttattttctgaacaaatatttttatttggggtTGTATCATTTAAAGTTatgtatagatttatttttgtgtatcatttgggtttctgaaatgtgatttttgtttttgtttttcggtTGGTTTTTGTCCAGATGTAAGATACATGAAAATGCTTGAAACTCTTCCCTTTTTTTATAGCTTTAAAAATTCTGGTGTACCAAACGGTTCTAGAAACAAAAATACGAAGCCTGGATTGACTATATTGCAAATGCTGACAATTAAGGACTGAAGCACAGTACCTGTTTTTAGAATAACATgtttgctcctctttccttttgacactgtgcttttataatattttaccaTCTTATTTTAATAGTCATTGTGTGCAATCTTAGACGATAAGTCAGTCCCTTTTTGTGTGCTTGCAAATGTGTGGTAAAATACTGGGGgtataagaagaaaaaaaacaaccctgtTCCAACCCTACTTGTGAAGATATTAAATTTAGTGAAATAATAGctatattaacaaattaaagatGTAGATCGCTTGAGATAACTAACCTGAACCCCACCTACTTAGCGAACAGGACTTATCGAATGAATTACTGTGTTGTACAGCATGAGATGACAGACGTTTAGGATGTATTTAAAGTGTTATATTAGAAAGAAATTTTAAAAGATgatgaaatgtgaattatacatttttactttaatgctATTGCAACACCCACCCTCTCCACAAACACATCCCCTCCCTAGTCATTTACACTGAACCTAGAGTCCATGATTTGAGACAAAAGGAATTTAATGACTgagatatgttttgttttttaagccaAACTGAAATTGTGTCCTTAGTCCATCATGCTGTCTCCTGCTGTCCCACAATGTGTGATGGAAATACTCCCTTTGTCTGTTTACTTcagttaattttattaaataataattaaaatagcctacccatttttgtttatttacgtttgtgttacaataaataaatgtggtttTCAATATAATCAATA

Function

GO:

id name namespace
GO:0043584 nose development biological_process
GO:0048793 pronephros development biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0048839 inner ear development biological_process
GO:0007018 microtubule-based movement biological_process
GO:0048884 neuromast development biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K20196 KIF3B; kinesin family member 3B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35105 lncRNA upstream 433792 40277414 ~ 40277687 (+) True G28032
TU35021 lncRNA upstream 651274 40051890 ~ 40060205 (+) True G27973
TU35006 lncRNA upstream 707779 39957987 ~ 40003700 (+) True G27960
TU34902 lncRNA upstream 1106651 39604612 ~ 39604828 (+) True G27881
TU34873 lncRNA upstream 1119068 39580779 ~ 39592411 (+) True AMCG00008007
TU35229 lncRNA downstream 29730 40751475 ~ 40755976 (+) True G28140
TU35231 lncRNA downstream 36953 40758698 ~ 40759010 (+) True G28141
TU35233 lncRNA downstream 39521 40761266 ~ 40761633 (+) True G28143
TU35274 lncRNA downstream 255909 40977654 ~ 40978428 (+) True G28174
TU35273 lncRNA downstream 294622 41016367 ~ 41017248 (+) True G28173
AMCG00008049 mRNA upstream 1630 40698024 ~ 40709849 (+) True AMCG00008049
AMCG00008046 mRNA upstream 50433 40649143 ~ 40661046 (+) True AMCG00008046
AMCG00008048 mRNA upstream 64313 40632644 ~ 40647166 (+) True AMCG00008048
AMCG00008045 mRNA upstream 87208 40608612 ~ 40624271 (+) True AMCG00008045
AMCG00008047 mRNA upstream 133049 40569832 ~ 40578430 (+) True AMCG00008047
AMCG00008050 mRNA downstream 2612 40724357 ~ 40745265 (+) True AMCG00008050
AMCG00008057 mRNA downstream 174871 40896616 ~ 40922814 (+) True AMCG00008057
AMCG00008061 mRNA downstream 208367 40930112 ~ 40948904 (+) True AMCG00008061
AMCG00008062 mRNA downstream 228467 40950212 ~ 40959551 (+) True AMCG00008062
AMCG00008059 mRNA downstream 241404 40963149 ~ 40975884 (+) True AMCG00008059
TU35066 other upstream 464241 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 652093 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 876543 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 1207102 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 2002564 38692739 ~ 38708915 (+) True AMCG00007970
TU35555 other downstream 1271114 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 2383968 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 2425028 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 2570851 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 4301403 45023148 ~ 45036416 (+) True AMCG00008177

Expression Profile