RNA id: TU35194


Basic Information

Item Value
RNA id TU35194
length 4084
lncRNA type read_through
GC content 0.35
exon number 3
gene id AMCG00008051
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40663972 ~ 40721745 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGCTGTAACTTTTTCTCTTTGGATCAACCAATATAAAAATCTGTCATCTTACATTGCAGCAATTGATTGCATGTGAAACCTTTTTAACAAAAAGCAGACATCTTTTTcataagttttttttctttctctgaagcattttttttgtacaatttcCCTGTAGTATGAAATGACCAAGCTATATAAAAATAGTGTGTGATGAATGCAAATATCCCATTTTTCCATTCACTTTTTCAGAGGTGGCAGTTATAGAGAATACTAAGTTAAAACAACTAGTTTCTAGACAGGATACACAAGGAACTTGGAATGCAAGACTTCACCATaagctaaaatatataaaactacatGTGGATTTTGTCTTCAACAGACAGTACCCAGTTTCtcataataaagcaaaaaatgtatacatatatagattttttttttctttttttttttttttttgtttaaattggatCCCTTCACGGTTTGTTCTGTACCTACtagtacaaaaatattttaagagtAAGTGCAGTACTAATAGGTACATGGAGGTTAAGAACTGGCAGAACCAAAACAAGGTAGTCATACAGAATACAGCTCAACAGAAATTCAAAACCACCTTGAATGTGATTTAACTAATATGAAGACACGGACCCAGAGAGGCACTTCCAGATGACATGTTCTGACTCCATGAATTCCCTCGCCCGTCCGAAGAGTAATCGCAAAACCAGTAAACCAGGTAAGGCAGATCGTGGATGTGAAGCAGTAATGGTATTGGCACTTCTCAGTTGTCATGCAGGTTCATTAGTGTATATTTCATTGGATTGGATTTTTGGCATATTTCCCAATGGTTTCCAACCAGCACGGACTGAATATAATATGGCAAACTTGCTTGTTGGTTTGCATTTTAGTGTTGCCTGGATTGGCATAGGACCAGATGTTAATTGTGTTCCTAATTAAGGAAGAATTGTATCACCGTGCTCTTTCGCAGTTTTGTGTTGAAGTGTGACTTCAGCGTTGGAATGACGGTTCTCGTCTCCCTCTCTACCAGGATTCTTTGCATGCAGAAGAGTTGGCTAAAAGCTTCTTACAGTTTTGATGTGGTGTCCTAATCAATCATTTGAACTGCCACCAATCAAAGATAATCAAGGGGTTAGGATCCCTGTTAAGATTGGTTTAAACAAAACCCTTTACTGAGATGGCAGAGGTGTTTCATATGACAAAGATTATAGGAAGCTGTCAAAGGAGGTTCAATTAAATCTCCCAAATCAGCCTTATTTCTCAGTTCCAAGACAAACAAAAGTGCTTTTAAGATGTGTATTCCAGTATCAAATCTGCGTTATTCAGTCTCAATTGTATGTTGCATTCAGTTGGAAATGTTACAAATCAGAATATAGCATTTTTACTTAACATTATTAGATGTTTGTGGAGCTGTACTGGCAAGTTTATATAATACTacagattttatattttgtatcctttttttttggcagtgGCACGTCTTAAGTATATAAAAAGAGAGAGCAGCCGTgtgtatatttaagaaaatggaAGAGATTAGGTAAACTGTTTTTGTCCTGTCAAATACTgttgttcttaaaaaaataaaaataataataataattaaacaaaaaaAGTACGAGGAGCCGGCCATTGCCCCGAAAGTAGCAGCAGCGCTGGAAGCTGCTCTGCAGGATGAAGACGAGATTCAGGTGGACGCCTCGACCTTTGAAAGCATCGGCAACAAAAAATCTAAGTCCAGGCCTAAAACAGGAAAGAAGTCTAGCACGCCCACATCTGCATCTAGTCCTGGGAGTTCAGCGAGTCCCCTTTACCCACAGTCACGTGGCCTTGTCCCCAAATGAtcctgacactttttttttttttttaaacatggccCTGTATTAAACTGAACAGGGTCCAAACAGAAACACTGGTATGAGATTTTTTTATGCTTTGTAACTGAAATCTACTATTGCATTTACCTTCTGCATCTTCCCTTTCAATTACTATGACAATTACTaccactttttttgtttggatttgtATTGTTAACCTGTACGATCCCAGGAAGAAAACTGACTCTTGATTTATACTATAATACAATGCAAACTCAAGTCGAACACGACTGGCCTTTAAGTCAGTGATTTGCATTTCAATGAAATGCAACATGAATCCGGGAAAAAGAAAGATctgatctttttttaatgttgttaaaatatgtagTGTAGTCCCCAGAACGTCATGTTCCTGCAATGGCTCCGGTCTTCTTTGAGACAGGACACCTGTGAAAAGCATGAGGCAGTATTCAGAAGAGAAGTTAATCAAATGTTATGCCACTGTCAGCTGGGCTAGACAGTATGTTTCAGTCACATTCTTCAGCCTCTTTTACCTTCAGATACAATTATATTAGTTCAGCAgtccaaaacaaatgtatcagtTCTTAAACCCACGATATATGAATTACTGATAATGCTCGTACTTCCATTAACATTACTTTACTTAAATAACGCTAAAGATGCGACCAGAGTATCCTatattttcctatttttgtattacatcaCATACACTAAATGAAGAAGAGGTGTATTTTGTTAAGTTTGGGATCCAGCTACATGCATGGTACTGTCATTCTGAGCTGTGACGAGCTGAACAACTGTGTTACCTAGAGACGATTTAAGAGAGACAAATATGCACACCAAATATACAAAGACTTCATGGTGCCTTACAGAAAGCTAACCCTTTAGCTCATTTGCATAGCTTGGAAACAACATTGGGTATTGCAGTCTTTAAGGGAAGTAAACATTGGTACATAGGCACCAGACCTTATTTCCACTCAGAATTAACAGTGCCGTTGCCCAGACTAAGCATTCTCTCGTGGTGAATCCAGAATTCTACTTCCGGATCTTTTGAATACTGCCCCTTTCAACCCTGTTTAGTGCCACTGCTTGCTGCTATTATAGGATAGGATACACCTATATAAAATACGTacactatatgtatatacaggAATGGATACTTTGCATAAACTGTGGACAACAAAATGTCTAGAACTAAActttgcaaaataatacattctaatttatattgtttttttgttttgtttatgaagaCAAATGTAGATAcgctttttgttaatttttttttaaatctttattttctgaacaaatatttttatttggggtTGTATCATTTAAAGTTatgtatagatttatttttgtgtatcatttgggtttctgaaatgtgatttttgtttttgtttttcggtTGGTTTTTGTCCAGATGTAAGATACATGAAAATGCTTGAAACTCTTCCCTTTTTTTATAGCTTTAAAAATTCTGGTGTACCAAACGGTTCTAGAAACAAAAATACGAAGCCTGGATTGACTATATTGCAAATGCTGACAATTAAGGACTGAAGCACAGTACCTGTTTTTAGAATAACATgtttgctcctctttccttttgacactgtgcttttataatattttaccaTCTTATTTTAATAGTCATTGTGTGCAATCTTAGACGATAAGTCAGTCCCTTTTTGTGTGCTTGCAAATGTGTGGTAAAATACTGGGGgtataagaagaaaaaaaacaaccctgtTCCAACCCTACTTGTGAAGATATTAAATTTAGTGAAATAATAGctatattaacaaattaaagatGTAGATCGCTTGAGATAACTAACCTGAACCCCACCTACTTAGCGAACAGGACTTATCGAATGAATTACTGTGTTGTACAGCATGAGATGACAGACGTTTAGGATGTATTTAAAGTGTTATATTAGAAAGAAATTTTAAAAGATgatgaaatgtgaattatacatttttactttaatgctATTGCAACACCCACCCTCTCCACAAACACATCCCCTCCCTAGTCATTTACACTGAACCTAGAGTCCATGATTTGAGACAAAAGGAATTTAATGACTgagatatgttttgttttttaagccaAACTGAAATTGTGTCCTTAGTCCATCATGCTGTCTCCTGCTGTCCCACAATGTGTGATGGAAATACTCCCTTTGTCTGTTTACTTcagttaattttattaaataataattaaaatagcctacccattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35105 lncRNA upstream 386285 40277414 ~ 40277687 (+) True G28032
TU35021 lncRNA upstream 603767 40051890 ~ 40060205 (+) True G27973
TU35006 lncRNA upstream 660272 39957987 ~ 40003700 (+) True G27960
TU34902 lncRNA upstream 1059144 39604612 ~ 39604828 (+) True G27881
TU34873 lncRNA upstream 1071561 39580779 ~ 39592411 (+) True AMCG00008007
TU35229 lncRNA downstream 29784 40751475 ~ 40755976 (+) True G28140
TU35231 lncRNA downstream 37007 40758698 ~ 40759010 (+) True G28141
TU35233 lncRNA downstream 39575 40761266 ~ 40761633 (+) True G28143
TU35274 lncRNA downstream 255963 40977654 ~ 40978428 (+) True G28174
TU35273 lncRNA downstream 294676 41016367 ~ 41017248 (+) True G28173
AMCG00008046 mRNA upstream 2926 40649143 ~ 40661046 (+) True AMCG00008046
AMCG00008048 mRNA upstream 16806 40632644 ~ 40647166 (+) True AMCG00008048
AMCG00008045 mRNA upstream 39701 40608612 ~ 40624271 (+) True AMCG00008045
AMCG00008047 mRNA upstream 85542 40569832 ~ 40578430 (+) True AMCG00008047
AMCG00008039 mRNA upstream 396820 40252212 ~ 40267152 (+) True AMCG00008039
AMCG00008050 mRNA downstream 2666 40724357 ~ 40745265 (+) True AMCG00008050
AMCG00008057 mRNA downstream 174925 40896616 ~ 40922814 (+) True AMCG00008057
AMCG00008061 mRNA downstream 208421 40930112 ~ 40948904 (+) True AMCG00008061
AMCG00008062 mRNA downstream 228521 40950212 ~ 40959551 (+) True AMCG00008062
AMCG00008059 mRNA downstream 241458 40963149 ~ 40975884 (+) True AMCG00008059
TU35066 other upstream 416734 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 604586 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 829036 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 1159595 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 1955057 38692739 ~ 38708915 (+) True AMCG00007970
TU35555 other downstream 1271168 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 2384022 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 2425082 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 2570905 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 4301457 45023148 ~ 45036416 (+) True AMCG00008177

Expression Profile