RNA id: AMCG00008053


Basic Information

Item Value
RNA id AMCG00008053
length 1181
RNA type mRNA
GC content 0.44
exon number 9
gene id AMCG00008053
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40868653 ~ 40875437 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGAGACGTAAACCCGGAAGTGCgtgagacagaaaaacaaacgtGACGAAAGTGCTGCTCGGAAATCAAGCGTTTCTGCCGTCGCTGCGTGTCAGCTGATATAGTGACAGTAGGAAGTAACAGCCGATTTCTGTGAGATTTCTTTGAGATTTCATCCGGACAGGGGAAAATGCAGCAGTTGCAGTTTACAAAAGAAGCTTTACCAGATTCTGTTAGTACGGACTTCCATAATCTGAATAAGCTCAGTGAACAGCAATATGTAAACTTGACCGAGATTATCTTCCGGTATCTACTCGAACCCAAGGAGACAGACAGATTTCTGAGGCAGCTGAGTGCCTTCGCCACAGAGAATGGGATGAGTCCGGGGCCCCTCCGAGAACTAGTGAAAAGTGTCCTCTTGCTCTCCAATGgtgCTCTGAAGAGCGGTTTGAGTGCAGACCAAGTGAAAACCGATCTTATTACTCTAGGACTGAATGAAGACAAAGCCAGCCATTTTTCAAACCAgGTTCATCACCCTGTGCTTTCAAGACTGGCAGTGGGACAGACCCTCATGGTCAACCAGCTTGTGGACATGGAATGGAAATTTGGAGtaacgGCTGGAAGCAGTGAGCTACAAAAAGTCGGAAGCATCTTTTTACAGCTGAAGTTAGTTATAAGAAAGGGAAActcaactgaaaatgtttatatGGAGCTGACCCTCCCGCAGTTTTACAACTTTCTACATGAGATGGAGCGTGCCAAAGCCAGCCTGGACTGTTTCAGCTAATGTAGCACAGACCCTCTTCCCTGCCAAGGGAAGCACTCACACTTGGCAGAGAACCGGTGAACGCAGAGGCCTGGAAACTAATGAAAACTGTTGTATCCTTCTGCGTGCAGAATCCGGTGTCCTGAGGGCAGTTTGACTGTGTCTTATTGCCATGGTTATTGACGCAGTGCAATCCGTCAGTGTGCTAACAGTAGATACCTTGTACATGTATAGCTcctttgttagttttttttttctctctctctctctctctatatatatatatatatatgtatatacataaaatcGTTACACATTTAGGTGTATTTTCCTAGTAaaaactgtacttaaaatgtCATTCCGAATCCTTTTGCTAAAGGAGCCAACTTgtgagaaaacaagaaacaaaataaatccattcatCGATGGCCAATAA

Function

GO: NA

KEGG:

id description
K22563 COMMD7; COMM domain containing 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35228 lncRNA downstream 118210 40748306 ~ 40750443 (-) True G28139
TU35203 lncRNA downstream 200791 40663917 ~ 40667862 (-) True G28119
TU35192 lncRNA downstream 204893 40659881 ~ 40663760 (-) True G28110
TU35176 lncRNA downstream 235889 40627777 ~ 40632764 (-) True G28095
TU35108 lncRNA downstream 580079 40278727 ~ 40288574 (-) False AMCG00008042
TU35294 lncRNA upstream 108182 40983619 ~ 40984904 (-) True G28190
TU35308 lncRNA upstream 142807 41018244 ~ 41019422 (-) True G28203
TU35311 lncRNA upstream 168259 41043696 ~ 41044047 (-) True G28206
TU35353 lncRNA upstream 253701 41129138 ~ 41129628 (-) True G28241
TU35434 lncRNA upstream 484707 41360144 ~ 41360468 (-) True G28308
AMCG00008056 mRNA downstream 19904 40847002 ~ 40848749 (-) True AMCG00008056
AMCG00008054 mRNA downstream 40137 40819849 ~ 40828516 (-) True AMCG00008054
AMCG00008055 mRNA downstream 99329 40755783 ~ 40769324 (-) True AMCG00008055
AMCG00008052 mRNA downstream 190909 40669670 ~ 40677744 (-) True AMCG00008052
AMCG00008044 mRNA downstream 452895 40394078 ~ 40415758 (-) True AMCG00008044
AMCG00008058 mRNA upstream 106459 40981896 ~ 40982690 (-) True AMCG00008058
AMCG00008063 mRNA upstream 180689 41056126 ~ 41078139 (-) True AMCG00008063
AMCG00008066 mRNA upstream 211511 41086948 ~ 41095005 (-) True AMCG00008066
AMCG00008068 mRNA upstream 253479 41128916 ~ 41189631 (-) True AMCG00008068
AMCG00008069 mRNA upstream 324187 41199624 ~ 41201818 (-) False AMCG00008069
TU34865 other downstream 1364061 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 1776898 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 1812974 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 1819056 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 2704111 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 140722 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 324052 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 971496 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 1885567 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 3542437 44417874 ~ 44418196 (-) True G28970

Expression Profile