RNA id: AMCG00008055


Basic Information

Item Value
RNA id AMCG00008055
length 1458
RNA type mRNA
GC content 0.62
exon number 9
gene id AMCG00008055
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40755783 ~ 40769324 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtacagtgaggTCACGTGGGCCACGGGTGTGGAGAAAGCCCAGGAGTGCAGTCGCGATTTCAAGGGCAATGCTTTGTGCAAAACATACACCGAGTGCCCGGCCCCCTCATGGCCCTCCTCTGTGTGCGCATTTTGTTTTGACTTGAACTGTGAGGAGGGAGCAGGAACAATCCCCGTCGGCAGAGGCACCCCCATCACCAGCCTGCCCGGTGCTCTCAGTCCTGGAGTAGATGACTCTTCCTCGGAGAGCGGCAGTGGGAACGGGCTGCCCACCCTGAACCCACCGGTGGCAGGCGGCGCCCCAGAGGGCGGCTCCTTCGGCGTGGTGAACGGGAACGGTGCGGGGGCCCCGCTGGACTTCAGCACCacgtcgtcctcctcctcctccgaggACCAGCCCGTCAACCTGAGCGAGAGGCTGCCCGCTGGACCCCTGTGCCCCTTCCAGCCCGACCCTCCCGACGGCCTCCGCACCCGTGGGAAATACGCCGGCAAGACCCCACCTGCCGACCTGCGGCTGGACCGCGACATCAGGGACTATGGCAACAAGtccCCTCAGTACAGCTCTGGGAGTTACGACTCGGTGAAGACCGAGGTGAGTGTGTGCCCCGAGGACCTGTCCGTGAGCCGTGCACACACCGCCGACGATGATGACGATGACGAGCACGACCACGACCACGAGGACAGCGACAAGATCAACGACACCGAGGGCATGGACCCCGAGCGCTTAAAGGCTTTCAATATGTTTGTGCGCCTGTTCGTGGACGAGAACCTCGACCGCATGGTGCCCATCTCCAAGCAGCCCAAGGAGAAGATCCAGGCCATCATCGAGTCCTGCAGCCGGCAGTTCCCCGAGTTCCAGGAACGCGCCCGTAAGCGCATCCGCACGTACCTCAAGTCCTGCCGGAGAATGAAGAAGAACGGCATGGAGACGCGGCCCACTCCGCCCCACTTAACCTCAGCGATGGCCGAGAACATCCTGGCAGCTGCCTGTGAGAGCGAGACCCGCAAAGCAGCCAAGAGGATGAGGCTGGACGTCTATCACGCACATGATGAACAGATTGCACTAGAAAAGCAGAGCGCCCGGGAGCCCGCCACTCTCGCGCACTCCGCCTACTCACTGGCTGCCACGGCCTACTCACAGGACCAGATCTACATCAACGGCGGCCTCAACTACAGTTACCGTGGTTACGGGGGTCTGGGAGCCAGCCTGCAACACCCGGTCTCCCTAACAACCAGCACTGCTCAGAGCAACGGTCCCACTGACCTCAGCATGAAGTCCGTGGCCTCgaactcctcttcctccagcacAAACAGCCGGGGCGTCCCCACAGCCCAGCTCAGCCCCACGGAGATCAACGCGGTGCGGCAGCTGATCGCAGGGTACCGGGAGTCCGCCGCCTTCTTGCTGCGCTCCGCCGACGAACTGGAAAACCTGATCTTACAGCAGAATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35228 lncRNA downstream 5340 40748306 ~ 40750443 (-) True G28139
TU35203 lncRNA downstream 87921 40663917 ~ 40667862 (-) True G28119
TU35192 lncRNA downstream 92023 40659881 ~ 40663760 (-) True G28110
TU35176 lncRNA downstream 123019 40627777 ~ 40632764 (-) True G28095
TU35108 lncRNA downstream 467209 40278727 ~ 40288574 (-) False AMCG00008042
TU35294 lncRNA upstream 214295 40983619 ~ 40984904 (-) True G28190
TU35308 lncRNA upstream 248920 41018244 ~ 41019422 (-) True G28203
TU35311 lncRNA upstream 274372 41043696 ~ 41044047 (-) True G28206
TU35353 lncRNA upstream 359814 41129138 ~ 41129628 (-) True G28241
TU35434 lncRNA upstream 590820 41360144 ~ 41360468 (-) True G28308
AMCG00008052 mRNA downstream 78039 40669670 ~ 40677744 (-) True AMCG00008052
AMCG00008044 mRNA downstream 340025 40394078 ~ 40415758 (-) True AMCG00008044
AMCG00008041 mRNA downstream 399036 40328731 ~ 40356747 (-) True AMCG00008041
AMCG00008043 mRNA downstream 457115 40289650 ~ 40298668 (-) True AMCG00008043
AMCG00008042 mRNA downstream 476877 40273552 ~ 40278906 (-) False AMCG00008042
AMCG00008054 mRNA upstream 50525 40819849 ~ 40828516 (-) True AMCG00008054
AMCG00008056 mRNA upstream 77678 40847002 ~ 40848749 (-) True AMCG00008056
AMCG00008053 mRNA upstream 99329 40868653 ~ 40875437 (-) True AMCG00008053
AMCG00008058 mRNA upstream 212572 40981896 ~ 40982690 (-) True AMCG00008058
AMCG00008063 mRNA upstream 286802 41056126 ~ 41078139 (-) True AMCG00008063
TU34865 other downstream 1251191 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 1664028 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 1700104 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 1706186 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 2591241 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 246835 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 430165 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 1077609 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 1991680 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 3648550 44417874 ~ 44418196 (-) True G28970

Expression Profile