RNA id: AMCG00008056


Basic Information

Item Value
RNA id AMCG00008056
length 363
RNA type mRNA
GC content 0.59
exon number 2
gene id AMCG00008056
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40847002 ~ 40848749 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGAAGAAAGCATCTCCCGCGGACGTGCGGAGCAGAAGCCCCGGCTCGGAGGGAGAGATGTTCGGCGCCTTTCAGGACTGGTGCCTCCGGACTTACGGGGACTCGGGCAAGACAAAGACGGTCACCCGGAGGAAATACACCAAGATCCTGCAGACGCTCCTGCAGGGCGAGGAGGCGGATGCCGGCTTTTTGGAGAGCAACCACATCAACGCCAAATTTAAATTCTGGGTGAGATCTAAGGGGTTTCAGGTCGGGAGCGGCGAGCAGAGGAGAGGCGCCGCTGGCAAAGCCGTGCTGTACGTCCCGGTGAAAGCCACGTGGGTGATGTTTGCTTCTCAGCCCTATACACAcgccaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35228 lncRNA downstream 96559 40748306 ~ 40750443 (-) True G28139
TU35203 lncRNA downstream 179140 40663917 ~ 40667862 (-) True G28119
TU35192 lncRNA downstream 183242 40659881 ~ 40663760 (-) True G28110
TU35176 lncRNA downstream 214238 40627777 ~ 40632764 (-) True G28095
TU35108 lncRNA downstream 558428 40278727 ~ 40288574 (-) False AMCG00008042
TU35294 lncRNA upstream 134870 40983619 ~ 40984904 (-) True G28190
TU35308 lncRNA upstream 169495 41018244 ~ 41019422 (-) True G28203
TU35311 lncRNA upstream 194947 41043696 ~ 41044047 (-) True G28206
TU35353 lncRNA upstream 280389 41129138 ~ 41129628 (-) True G28241
TU35434 lncRNA upstream 511395 41360144 ~ 41360468 (-) True G28308
AMCG00008054 mRNA downstream 18486 40819849 ~ 40828516 (-) True AMCG00008054
AMCG00008055 mRNA downstream 77678 40755783 ~ 40769324 (-) True AMCG00008055
AMCG00008052 mRNA downstream 169258 40669670 ~ 40677744 (-) True AMCG00008052
AMCG00008044 mRNA downstream 431244 40394078 ~ 40415758 (-) True AMCG00008044
AMCG00008041 mRNA downstream 490255 40328731 ~ 40356747 (-) True AMCG00008041
AMCG00008053 mRNA upstream 19904 40868653 ~ 40875437 (-) True AMCG00008053
AMCG00008058 mRNA upstream 133147 40981896 ~ 40982690 (-) True AMCG00008058
AMCG00008063 mRNA upstream 207377 41056126 ~ 41078139 (-) True AMCG00008063
AMCG00008066 mRNA upstream 238199 41086948 ~ 41095005 (-) True AMCG00008066
AMCG00008068 mRNA upstream 280167 41128916 ~ 41189631 (-) True AMCG00008068
TU34865 other downstream 1342410 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 1755247 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 1791323 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 1797405 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 2682460 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 167410 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 350740 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 998184 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 1912255 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 3569125 44417874 ~ 44418196 (-) True G28970

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042828 False 1184 processed_transcript 0.50 4 NC_007134.7 17146561 ~ 17211274 (+)
grasscarp (Ctenopharyngodon idella) CI01000001_04567822_04568927.mRNA True 1399 mRNA 0.42 4 CI01000001 4567464 ~ 4569260 (+)