RNA id: AMCG00008058


Basic Information

Item Value
RNA id AMCG00008058
length 543
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00008058
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40981896 ~ 40982690 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGCTTCTTACACTGACTTCAGGTGTTATGACTTTGAAAATGACGTGAAGTTCCAGAGCGGGTTAAAGACCATGAATCTCACTAGTGACGAAAAGCAGGAAAACATCCTGAAGATGCAAATCTTCTATTACAACAGGTTTATTCAACCCATTGACCTAGAGGGATACCAGCAGTGGCTCGCTGAGACGCACCAGCCAGTCCAGTCGGCCTGTGAACTAGAGCTGCTGAAAGCCTGCAGCAGTCTGCGCATACACGATGAGCCCAGACAGGACACAGATGGTCATCCCGAAACTCAACCATTGGAGCTCAGCACAGGGGAATTCCCCACTCAGCACAAAAGTGGCAATCATTCGCAGGGCTTAAATGAGCTCTCTCCTCTTGCAGAGGACCGCAGACTGTCATTTGCAGAGGTGTTTCAGCTCATACAGTCGGGTAAAGAGGTTCCCGGcttacaaaaactaaatatcaGTCCCTGCGGTCAGAGGCCCACTGCGTCCCAAATGAGCAGGAGACCCAAGCCATGGGAAAGCAAACCCTGA

Function

GO:

id name namespace
GO:0051301 cell division biological_process
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35228 lncRNA downstream 231453 40748306 ~ 40750443 (-) True G28139
TU35203 lncRNA downstream 314034 40663917 ~ 40667862 (-) True G28119
TU35192 lncRNA downstream 318136 40659881 ~ 40663760 (-) True G28110
TU35176 lncRNA downstream 349132 40627777 ~ 40632764 (-) True G28095
TU35108 lncRNA downstream 693322 40278727 ~ 40288574 (-) False AMCG00008042
TU35294 lncRNA upstream 929 40983619 ~ 40984904 (-) True G28190
TU35308 lncRNA upstream 35554 41018244 ~ 41019422 (-) True G28203
TU35311 lncRNA upstream 61006 41043696 ~ 41044047 (-) True G28206
TU35353 lncRNA upstream 146448 41129138 ~ 41129628 (-) True G28241
TU35434 lncRNA upstream 377454 41360144 ~ 41360468 (-) True G28308
AMCG00008053 mRNA downstream 106459 40868653 ~ 40875437 (-) True AMCG00008053
AMCG00008056 mRNA downstream 133147 40847002 ~ 40848749 (-) True AMCG00008056
AMCG00008054 mRNA downstream 153380 40819849 ~ 40828516 (-) True AMCG00008054
AMCG00008055 mRNA downstream 212572 40755783 ~ 40769324 (-) True AMCG00008055
AMCG00008052 mRNA downstream 304152 40669670 ~ 40677744 (-) True AMCG00008052
AMCG00008063 mRNA upstream 73436 41056126 ~ 41078139 (-) True AMCG00008063
AMCG00008066 mRNA upstream 104258 41086948 ~ 41095005 (-) True AMCG00008066
AMCG00008068 mRNA upstream 146226 41128916 ~ 41189631 (-) True AMCG00008068
AMCG00008069 mRNA upstream 216934 41199624 ~ 41201818 (-) False AMCG00008069
AMCG00008067 mRNA upstream 220218 41202908 ~ 41219672 (-) True AMCG00008067
TU34865 other downstream 1477304 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 1890141 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 1926217 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 1932299 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 2817354 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 33469 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 216799 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 864243 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 1778314 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 3435184 44417874 ~ 44418196 (-) True G28970

Expression Profile