RNA id: AMCG00008059


Basic Information

Item Value
RNA id AMCG00008059
length 3257
RNA type mRNA
GC content 0.54
exon number 24
gene id AMCG00008059
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40963149 ~ 40975884 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGACTGGATAGCCAGTTTGAATTAAACCCCCTATTAGGTGCAATGTCCATCCGAGTTAGCAAACCAGAACTCGGGCTATGAGCCTCCTTTGGAGGTGGACACCTGGGGATATGAAGAACAAATCTATGAAGAAGATCTGCGCCGTATCGAGAGACTATTCCAAGAGGCGGACACAGATGGGGGTGGAGGATGAATACCTGAACTACACAGTTTTGGAATACACAGAGAAAGATGCTCTTCATCGGCAGACCCGACCTCTGTACTTCCCCAAGTCATTGAAGATCGTCCCAGTGGGTCACTCCGAGCTGATTGTGAGGCTACAATTCAACCCAGACCAGTCTCCCCAAAGTCGCGAGGCGGACAAGGGAGGTCAGGCAGGTGTTGACAAGGCCCAACCCCAGCCGGGCTGCTACCTGTCTGTCAGCCGAGACGGGGTGCTCAACTTCTGGAGCGAGAACTTCAACCGCCTTCGCGCTGTCAGTCTGGACCATGTTCAACGCAGCCGTGGCGAAAAGATCTGGGTGACTAACATGGTTTGCATCAGTAACCTGAACCTGATGGCCATATCGACGACAGGCCGTGACCTGGACTTCTTTGACATCAGTGCCAGCAGGTGCGACTTGGTCTTCTCCCTCACTGGCCTTAAGAACTACGTTCTAGTCATGGACTACTGGTCAGACGGCAAAAACGGTGTCTTCTCCGTCGGGGATACAGGAGGTGGcattctggttttcatttcctcAGACGTCAATCAGCATGGCATTTTCAGCACTGCCAACATCATCAACATCGGGGGAAAATGCTGCCTCCCTGTGTCAGCACTGCTCAAAAACACGTCCAAGGATTACCAGAACTTCAGAGTAGCTGACCTCCACGGTGATTGGTGTTGTCAGATTCAGTTCATCCCCGAGCTGAAGGCCATTGCCACCTGCTCGGCCTCAGAGGACACTGCCATGGTGCTGACCCAGGTGCCGGAACCGCACACGAAAGGAGTCAAaaaatgtgcttttcctCTGAAGAAGGGAATTCTGTGCTTCGATTACTCTCCGAAGTTTAACGTACTTGTGACGGGGAGTGTGGACTGGATGGTACGGCTCTGGAACCCCTGCACCTCGAAAGCCATTGCCGAGTTGAGTGGACACACGTCAGCCGTCACGCACGTTGTGGTCAACGTCCACGGTGACCGGATCATCAGCATCTCCAAGGACAAAAATGTGCGTGTGTGGGATCTGAAGGAATACGGGTGTCTCCAGAACATACACCCCAGAAGCATACAAATGGGCCACTTCCCCATCTCAGACATTCTCTATAACAAAGCCTCTGACACCCTGGTCCTGGCCACCGACAAGATGGGCGTTCTGCATGGTGCTGAGGACGTGAGAAACAAGGAAGCCACGTCCCACAAACAGCCCTTGTGCTGTGCACTGTACAACAGCAACTTTAAACAGGTGGTGAGCGGATCTCACGATGGTATGGTGATTGTGTGGGACGTCCTGACCGGGGAGAAGGTCATGCAGTTCGTCGTGGGTAATGGGGTGGAGGTCACGGCCATGGCCTTTGACGGCCCCCGGAGACGCCTCATCACTGGCTCCAAAGACGGCTCCATCAAGCTGTGGAACTTCAACAACGGAGCCCTCCTCTGTGAGCTGCCCAAGCTGGATGGCAGTGAGgTGACAGGAATCGTGTACATCAAAAAGAGGATTTACGTCACCGGCTGGAGCAAAAGAGTCATGTGGTTCCTGGACCTGAAGGAGGATGACAGGATAGAGCATCGCCAGTGGAAATGCTACCACTCAGAGGATATCTACTGCATGGATGCCTATCGCAACAAGCTCCTCGTCACGGCTTCCTACACTGGCGACATGGTAGTGTGGAACGTCGACTCCGGCCTGGCCTTCAGCAGGCTCAACTCCCACGAGAGCCCCCGGCCGCTGCTGCCCATCAGAGTGTTTGATGAGCCTTGCGTTCGGCAGGACACTATCAAGACACAACAGGGGTCTGTGGGCACACAACACCCTGCTGCCCCTCCACGCAGGGCCCTGGCCTCAGCTGGGAAGGGAACCAGCCAGACTCACACCAAACCGGAGAAGAGGTGCAGTTCCCAGGGAACCTGTTCTGCGTCAGTAACAATGGACAGTGCAGATACCAGTTCTTTCACCGAGAACCCTTCAGAGAAGACAAACATTGAGAAGAAAATCAAAAGACCAAGCCTGGCAGTAGAGAAGGTGCTGTTTCTGCACACCCGTGAGCGCCACCCGGACTCTGCCATCTTGCTGACGAGCAACGCCGATGGATACATATGCGCCTGGTCCATCGACCCCCGCGGTGGGATGCTGGCAAAGTTCAAAGCCACGCAACACAATGATGCCGCTGTCTGTTCGATGTCCACCGACCTCGAGGACCAGATTCTTCTGACGGGAGACACCAGAGGCTACGTCAAGATATGGGACATCAGTGATTTCTGGAACTGCACTGGAGAAGGGAATAGTTTGAGATTGCCAGACCTCATCCCAGCCTACTGCAGAGTGGAGCGGCCCATAACCCCGGCCTTCCAAAATGAGACCGAGGTGTTGGATGGATGGAGtgtctctctcacccccccaccccttctcaGCTCCTGGAGGTGCCATCTGAAGGCAGTGACTAGCCTGGAGTACGTGGACAGGTTTCAGCTCATAGTCACAGCCAGCTTAGACTGCAATGTCCGACTGTGGAGCATAGCAGGGAAATACATAGGAACATTTGGCCAGGGCCTGTGGAATGTGGGGGTCACCGACACCCTTCCCCTGCCTTCTGAATTAAAGAGAGTGGGCTCCTATCAGACTCTGAAGGTCATCAATGAAGGAACGCGCCCCCACTGGAGGAAGCTGGTCAGACAGAGGAAGCAGAGATCGCAGGTATTTGCTTTGCTTATGGGCAACAAGGAGGCCGCCGCCAAAATTGAGGAGCTGCTGCCCACTGACCCTCGCATCGCCAAGTATAGCAAGGAACAGATTGAGGAAACATGGCATCAGTGGCAGGTCAAAGGGGAGCAGAAAAGCAGTATCCTGGGCGGAGGGTACGTACAGAAGGTCAGATATCACGTACCACCCTCATTTGACCGGAAGGATGTCTGCAACAGATGAACAGAGCAGATGAGGATCTACAAGTCCCTACCCTATTCCTCCCTCGGCCACATCACTTAACCGCCTCTTCCTGAAATGCTGAAGGAACGGCAGCACAAGGCCCAGGAGGGCATTTAGATACGCAGAAGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35233 lncRNA upstream 201516 40761266 ~ 40761633 (+) True G28143
TU35231 lncRNA upstream 204139 40758698 ~ 40759010 (+) True G28141
TU35229 lncRNA upstream 207173 40751475 ~ 40755976 (+) True G28140
TU35194 lncRNA upstream 241458 40663972 ~ 40721691 (+) False AMCG00008051
TU35105 lncRNA upstream 685462 40277414 ~ 40277687 (+) True G28032
TU35274 lncRNA downstream 1770 40977654 ~ 40978428 (+) True G28174
TU35273 lncRNA downstream 40483 41016367 ~ 41017248 (+) True G28173
TU35282 lncRNA downstream 42360 41018244 ~ 41019386 (+) True G28178
TU35343 lncRNA downstream 153252 41129136 ~ 41129628 (+) True G28234
TU35380 lncRNA downstream 223569 41199453 ~ 41201854 (+) True G28263
AMCG00008062 mRNA upstream 3598 40950212 ~ 40959551 (+) True AMCG00008062
AMCG00008061 mRNA upstream 14245 40930112 ~ 40948904 (+) True AMCG00008061
AMCG00008057 mRNA upstream 40335 40896616 ~ 40922814 (+) True AMCG00008057
AMCG00008050 mRNA upstream 217884 40724357 ~ 40745265 (+) True AMCG00008050
AMCG00008051 mRNA upstream 241404 40711479 ~ 40721745 (+) True AMCG00008051
AMCG00008060 mRNA downstream 17837 40993721 ~ 41013873 (+) True AMCG00008060
AMCG00008064 mRNA downstream 135172 41111056 ~ 41118960 (+) True AMCG00008064
AMCG00008065 mRNA downstream 148019 41123903 ~ 41128874 (+) True AMCG00008065
AMCG00008070 mRNA downstream 374544 41350428 ~ 41356833 (+) True AMCG00008070
AMCG00008077 mRNA downstream 582536 41558420 ~ 41563189 (+) True AMCG00008077
TU35066 other upstream 715911 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 903763 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 1128213 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 1458772 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 2254234 38692739 ~ 38708915 (+) True AMCG00007970
TU35555 other downstream 1016975 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 2129829 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 2170889 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 2316712 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 4047264 45023148 ~ 45036416 (+) True AMCG00008177

Expression Profile