RNA id: AMCG00008060


Basic Information

Item Value
RNA id AMCG00008060
length 5607
RNA type mRNA
GC content 0.43
exon number 16
gene id AMCG00008060
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40993721 ~ 41013873 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGACTTGCAATCTTCATGTTCAAttctggacttttttttttttatatatatatattattagttaCAACGTTACACAAACAAGGAAGTGCTTTTGTTGCACCAAcaaggtgtgtttgtttttgtcagccCTGTGCGGGTTGCATTGCTTAAGAGCGCAGACTCGCACTCGACGATATTCTTGCAAATCGGCACCCGTTGCTTTTcattgtagtttttgttttcaaaagccTAAATTAACCAGGAAGGCAGGCCAACATGATTCCCGACAGTGCCCCGCAGCAAGACGTGTACCAAGCACCGCAAGATTTGATCAAAGAAGCCCACGTACAAAACTTTGCACAATATAAAGAACTTTATATGAAATCGGTGGAAAACATGGAAGagtTCTGGGGTGACATCGCCAAAGAGTTCTACTGGAAGACCAAGCACACGGGCCCGTTCATGGACTACAACTTCGATGTGACGAAAGGCAAGATCTACATCAAGTGCATGGAAGGAGCCAGCACTAACATTTGCTACAATGTCCTGGACAGGAATGTCAATGAGAGAAAGCTGGGCGATAAAGTTGCCTTCTACTGgGAAGGAAACGAGCCGGGAGATGAGGAGAAAGTGACGTATCGTGAATTGCTGCAGCAAGTCTGCAAATTCGCCAACGTCCTCAAATCGCAAGGTGTGAAGAAAGGGGACCGCGTGTCTATCTACATGCCCATGATCGTGGAGTTGGTCGTGGCCATGTTGGCCTGTGCTCGAATCGGAGCCACACACTCCATTGTGTTTGCAGgattttcagcagaatctctgTGTGAGCGCATCTTGGACTCCCAGTGTTCACTCCTAATCACTGCTGatGGATTTTACCGTGGAGACAAACTAATCAACTTGAAGCTGATCGCTGATGACGCACTTCAGAAATGCCAGGAAAAGAACTTCCCTGTGACAAAATGCATCATGATCAAACACCTGTCCAAAGAGGAGGCCAGCTCCCAGCCCACGCCCTGCTCCCAGTCCCCCCCAGCCAAGAGATCCTGCCCCGGTTTGCAGGTGCCCTGGAACCCGGAGGTGGACCTGTGCTGGCACAGCCTGATGCAGGACGCCCCCGCTGTGTGCGAGCCCGAGTGGTGCGAATCCGAGGACCCGCTGTTTATACTCTACACCAGCGGCTCCACTGGGAAGCCCAAGTTTGAAGGTCTCCCCACCTACCCAGACATGAGCCGCCTCTGGGAGATCGTGGACAAGTACCAAGTCACCAAATTTTACACTGCACCCACTGCCATCAGATTGCTGATGAAGTTTGGAAGTGAGCCTGTTCAGAAGTTTAAGCGAGACTCCTTAAAAATCCTGGGGACAGTGGGAGAGCCCATCAACCCCGAGGCGTGGCAGTGGTACTACAATGTGGTCGGGGAAAAGAGGTGTCCCGTTGTCGACACCTTCTGGCAGACCGAGACGACCTTTCCTTTCTTTGGGGTTGTTCCTGCCATCCTGAACGAGTCTGGAGAGGAACTGGAGGGACCAAGCGAAGGATATCTGGTGTTCAAGCAGCCTTGGCCAGGTGTGATGAGGACCGTCTATGGGAACCACCAAAGGTTCGAGACAACGTACTTCAAGAAATTCCCGGGTTACTATGTAACAGGAGACGGGCACCTGCTGAGCACGGCCGAGGTGGAGTCTGCCCTGGTGGAGCATGCTGCCGTGGCTGAGGCGGCGGTGGTCAGCCACCCACACCCGGTCAAGGGCGAGTGTCTGTACTGCTTCGTCACCCTCAAAGACGGCTACGAGTACAATAAGGGGCTGGAGGCCGAGCTCAAACAGCAAGTTAGAGAAAAGATCGGAGCTATTGCCACCCCAGACTACATGCAGAACGCTCCTGGGCTGCCCAAAACAAGATCAGGGAAGATTATGCGTCGAGTGTTGCGAAAGATCGCCCGGAACGATAAGGACCTGGGGGACACGTCAACGCTCGCTGACTCCGCGGTCATTGAGCAGCTCTTCAGAAACCGCTGCTGCACCGCTGTGTAAACCCCACCAGGAGTTACACAGACAGTTTTTAgcgcaaagaaaaaaaaaaaaatctaaccatAACAAAATAATGGAAGAAAAAGTTGTACAAATTgtggagggaaaacaaaactatatatatatatatatatatatatatatatatatattttgttttaacaaagatagtctccttttattttttaatttaccccTAGATTTTAGTCCTATCCCTCCTTTTCATGGTATTTTATCTGCTTCTGAGACTCTGGGAATCCTTTATGTGTTTACCAACCTacgtatatatgtgtgtgtgagtgtaaatataattattttgtttgcccATTACATCCACGAGTGCTCTCAGTGAATGGCCAGGTGCTTAAAAATGAGAGAACACTATGAATTTGCCAAACATTTGCCACTGCCTTTCCCCCCCGCACTGTTCCCATATTTTGTTCCCCAGCTGTTCTATCTGGTTTGTTTTCGCTGATATTTTTACGGGTTACAGAGTTGATGTTTGCTTGCTGAAGATCAGTTGATCGAGTCAGCTTGCTTTTTATAGTCTCGGATGTGATTCACTTTGAGTTGTGACTATCTGCGTGTTCATGTGCCAAGTCCTTTTGCAAAAGAGCTGATGGATGTTAAATTAGCCCCCGTTCGGAACTGTAATCATGACGCAAAGACACCTGGCTGTGTGAAGGACATTTTACACTCACTCCACTCACTCACTCCACACTTGTATTCTTTCCGCTAttatatttcactgtatttatatttaaatgctcGGCAATGCAGTGTCCTGATTGGCATAGCTCTGTTGCTCATGCTTCTGTAgtaaaaaaactcaaaacaaaacaagaaaagtacccctgtttttctttccagcaCGTATCTTTTATACTAAATTGCCTGCCTTTCCTGAGATATCTAAATGGCTTGTAAACGGCGACATTTATATGAAACTTGGATCGTAGATTTGTGCTCtggtgtatgtgttttttgttcctttctGAAAGTGGGTGTATAAATATGAAACGCAAGCCTCTCAACTGGAGTGCTGTAGATTTCCTGACAGCAGGCAAATTCCCGTGTCCCTCACTCCCATCCCCAGTGCTCCTGCAGCCGACTGCCGTATCCAATCCAAAGCCCCATTCTCCTTCCGAAATCATATTGCATTTCAGTGTCATTGCTACGAACCAGTCCTGGGTCAACTGTTCTGCTGCATGATACTACACAGAGGTGGAGTAAAACTGTGGAACAAACCCCGCGACTTTAGGGTAACCTGGGGCAGTGCAGGGCGAGTGGGTCTGCATTCCACAATTCCAACATGCAGATTCCTGGTCATTTTTCCTGCTTATTCAGGGATTCTGattgttttatgcctttaaTTGACAGGTTAGAGAAACCATGCTTAAGATGCATTCCAGTAGAGGGCAGCAATTTCATAGTTTTGATGGACTGCAGTGAGGAGCATTAGTCAGGGCTAAATGAATAGCCATGGcccttttcttttgctttcctCACATGAACCCCATGTctgttatgaaaatgtaaacagtatTACATCTGTCAATGAGTTGAAAACGGCAGGTGTGatgttgtattgatttgtgttgtgttaattCCACGTGATGGTGTTCTCCCAGTCTTATCATAGAAGCATGCtcctttttattgatttatttttaacatttcttgtAAGATTGGAGACTCCCAGACTCGGTGGCTCGGAGCTTTATGCATCTGGCAAGGCTTCTTATGCGTTTGAAGATTTACATTTGTAGTGCAGTGTTTCGTGTGCGTTTGGTTCGTGTCCGTCCGTTGCAGTTGGTTTAACTGAGTGGCTGCAGGTTTCGGTGAATTAAAGGAAAGGGACTGATGTtaaggtgtgtgtatgtgtgcgtgttcAGCGTTGGTCTCCCATTGGTGCAGTGGTTGTTGATTTTGTCTCTGAAAGGACACTGTAAGAAAGATGAGGAGGGCAATccatttaaaactataaatcaataaccagcatgtttttttttttcatgtatacaaatatacaaaagcCTTTAATTTGTTATCATGCACTCTCACTACAGCTTAACATGAAAGATGTAGGGCTGCATGTAAGAAATAAGTCAaatttaacatgcaaatgaaaGTAAAAGTGACAACCTAAAAGAATGGGGACCATGCTGTGTGAATATTTGGTTTATGTCGGAAAGCGCGATGTCAAATCTTTCACGGTTCATCagtatgaaatatttttaaaataaagaagtggGTCTACAGAGACCATTTGAATGCAGAGTTTGTTTTTTGGCTATGCATATATAAGAGAACTGcacaatgtttcattttaaaatgcaactaTTTCCTTTTGGTTGTCTAGTATTTtatcaatctttttttatttattttagctcatGGGGAAAAATATGtgaaggattgtttttttaaatgtgaaatccCCTAGCCGTAATGTTGGCCCATTGTGGTGACTGGCATTTAAACCGGATTCCCTACCTCttgctgaaatgtaaaaaacgcacaattcaaatacaaaatatgtatgtttctaCAGAAATCATGTagagtgttttgttgtgttttatgtattaattttttttctttttatagtttCAGGGAAATCTTTAGTCAAAATGCAGGTTTTTAAAGAAGCACTACTGTTGGTGCATGTTCTTCTGGGCACTGATTCACTATGCTTTTCCTTCTCTTTACCCttcatttaatatgtatgtaatcCTGTCTGTAATATTCTAGTCTCCTGTGTATGATTCTGTGTGAAAGACTCCATGGCTTTACTTTCTATTTACATGCGTTTTATTCCAGACAATTGCGCTAAAGATCTGTGATTTCTCCTCTAAACCACACATTTTGTGGGTTGTAGGATTTAAAGTtgtttaatggaaatgtaaagttAGATCCTAAAACGTTCAGCTGATTACATGTTAAAAGGTTTTTTCAAGCATGTGGtttaaacaggaaatgcaaAGTATAGGCATAGGTACATAGGCATTTGAACATCAGTGCTCAAACCAGTGTCCATGGAGTTAGAGGAATTTGGACGAACGTGTATATTGAAAGGAATAAAATGCTGTGTATGCccgttttattttcttttaatttgttccagTTCCACCTTCCCCCGAATATCGATCAATATCCGAACTGTAGGTGTTAAGAGGGCAGCACTGTACCCCTTGCTCTGGATTGTATAACCACAAACCATTCATGTAATGAACCAAAAtacaggggtggaaagtaactACAACTACACTCGTTattgtaattgagtagctttttcgtgtacttgtacatttttgagtatttttaaaatttgatgATTTTACTTTTgagttttgaaatgtatgttttgagtGAAGTATTGTAGTTCGCTACTTTTATAAAGGCATTCGTTACAGATTACACTTTTGTAGGCTGTCACAGAAAAAATGTgggtgacagacagacaaatagacCAATAACTGAAGTAGCAACACATTCAAATGTCCAGCATCCCGCCCACCGCgctcagcagccaatcacagtgcgTGTGTGATGCTACGGCTGGTCCGTCAATTAGTCACGGATTTGCAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35274 lncRNA upstream 15293 40977654 ~ 40978428 (+) True G28174
TU35233 lncRNA upstream 232088 40761266 ~ 40761633 (+) True G28143
TU35231 lncRNA upstream 234711 40758698 ~ 40759010 (+) True G28141
TU35229 lncRNA upstream 237745 40751475 ~ 40755976 (+) True G28140
TU35194 lncRNA upstream 272030 40663972 ~ 40721691 (+) False AMCG00008051
TU35273 lncRNA downstream 2494 41016367 ~ 41017248 (+) True G28173
TU35282 lncRNA downstream 4371 41018244 ~ 41019386 (+) True G28178
TU35343 lncRNA downstream 115263 41129136 ~ 41129628 (+) True G28234
TU35380 lncRNA downstream 185580 41199453 ~ 41201854 (+) True G28263
TU35424 lncRNA downstream 350722 41364595 ~ 41366619 (+) True G28298
AMCG00008059 mRNA upstream 17837 40963149 ~ 40975884 (+) True AMCG00008059
AMCG00008062 mRNA upstream 34170 40950212 ~ 40959551 (+) True AMCG00008062
AMCG00008061 mRNA upstream 44817 40930112 ~ 40948904 (+) True AMCG00008061
AMCG00008057 mRNA upstream 70907 40896616 ~ 40922814 (+) True AMCG00008057
AMCG00008050 mRNA upstream 248456 40724357 ~ 40745265 (+) True AMCG00008050
AMCG00008064 mRNA downstream 97183 41111056 ~ 41118960 (+) True AMCG00008064
AMCG00008065 mRNA downstream 110030 41123903 ~ 41128874 (+) True AMCG00008065
AMCG00008070 mRNA downstream 336555 41350428 ~ 41356833 (+) True AMCG00008070
AMCG00008077 mRNA downstream 544547 41558420 ~ 41563189 (+) True AMCG00008077
AMCG00008081 mRNA downstream 756077 41769950 ~ 41789678 (+) True AMCG00008081
TU35066 other upstream 746483 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 934335 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 1158785 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 1489344 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 2284806 38692739 ~ 38708915 (+) True AMCG00007970
TU35555 other downstream 978986 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 2091840 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 2132900 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 2278723 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 4009275 45023148 ~ 45036416 (+) True AMCG00008177

Expression Profile