RNA id: AMCG00008061


Basic Information

Item Value
RNA id AMCG00008061
length 6807
RNA type mRNA
GC content 0.45
exon number 26
gene id AMCG00008061
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40930112 ~ 40948904 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCACAGTGCCTCCCCCGGGGTCTCACACGCCCCCCAGGCCTCTGTGCCACCGGAACAGCGAGAGCACAACGTGGGGGAAGATGGCAGTGAATGTTCGTCTGACATCTGAGAACTCGGATAAATTCAATCGTTTTGAGCTGTTGTCATGGATCAATGGATCACTGGAAACACAATTCATGAAGGTCGAACACACATGTTCAgGTGCCATCTATTGCCAGTTGATGGACTGGCTGTTCCCTGGTTCTTTGAATATAAAGAAAGTCAAGTTTCAGGCCCATGGGGAAGTTGAGTACATTCACAATTACAATCTGCTGCAGTCAAGCTTCAAGAAAACCGGCGTGACCAAAGATGTTCCAGTACATAACTTAATCAAAGGGAAATTTCAAGACAACTTCCAGTTTCTGAAGTGGTTCAGGAAGTTCTTTGATGCTAATTTCTATGGCCAAGTGTACAATGCTTTAGCAGCGCGTGATGGACAACTGATTCTGCCTGTGCATGATGTACCTTTTTCTCCTCAAGCTGTCAAATCCTTTGGCAGCCCTAAACACACTGACGTGAAAGTGAAAATTGAGTGCATATCCGACGACGAGGCCTACAATCAGAAAAATAAGCGCATCACCTATCTTGATGTCTGGCAAGAGACCTTTTGCTGGGTTGGTCCAAGTAAACTTGGGGAGATCTATGCATACTGTGAATTCTGTGACCTCAATTTAACCATTCATCACAATGGGAAGATGGACTTGAAGCGACACCAGGAATCCAAGAGGCATCACAGGAACATGAAGAAAAAGGCTCCCATGGTGAAGACGAACAGCAATTTGAGTAATGGCACAATTGACTCCTTCTCCTGTGGGGTCAGCACTCTGAAGTTCATTGGGAAGCACTGCACAAGTGAGATGCTTTCAAAAATGGGAAACGGAGCCAAAGTTTCATGCCGCATTGCAAGGTATGTGCTGGGGTTCAAATATCCGAAAGACATTGCTTCCATCTGTACCCAGACTCCGTATTGCGTTTATCTATACCGCAATATAGATCTGGGAGATGAGGAAAAGGCTGATGTTGTGCTAGTGGGATATTACGACGAAAAAAATGCGAAAAACAGGCTGCGGCTTGTGGATGTTGCACAGCCTAAAGCAGAGACCGGTGCATCTGTGTCTGCCTGCCTTGTGGATACACTGAAGAAGTTTGACATACCAATTGGGAACCTCACTGCTTTCTACACAGACTGTGCTCCTGAGCAGGGTGAGGCTGTCCTCTCCAGGCTGAAGGAGATTAACCCTAAAATTATTCACATGGGAGGCCTGTACCACCTGGCCAATGCCGCTTGCAAGTCTGGAGTTGCGGCTTCTATTATGAAAGTTGATCAGCTCATTTCTGACATTCACAGCCATTACTTCACCTGCTCAACAGCCAATGGTAATCTGAAGGAACTCTTCTTGGGCACTGAGCCTTACGATGGGGCCATTCCCGCTTCAGCACAGTGCCTTGTGTTTAGTAAAATCGTCCGGAAAATAAGTGACATGTGGCCTGATCTCGTGACATACTTCCAGTCCCGCAGTCTGAAGGACGACAAGGTCAAGCTCATCCGTGAGTGCCTCCAAATCCACCAGCTGAGGTTGACCTTCTTGTTTATGAGCCACGCACTGGAACCCCTCTGCAGTTTCCATAGCAAATTGGAGAAGCAAGGCAGTGACGTTGCACAGTTGCTGAAAGATGCGAGCAGCCTTCTCAGGTCTTACACTACCAGACTTCTCCTTCCGGAAGCTGTAGTTAAACTGTTAAAGGGATGTGATGCCAAACTTCTGAAAACTCAGAAGAATTACCTTCAGGAAAGTGATCTGAACATTGGTCCAGAGGTGGAGGAATACCTGGCACAGCACGGGAAAGACCTTGGTGTTGCCTCGGACCGTTTCTTTAAAGATGTCACCTCCTTTTACACTGCTATAACAACTTGTATCATTCAGAATCTCCCTTTGCATGACACGTTGCTGAGAAACATTTCCACTTTATTAAGTCCTACCGGCAAACTAAAAGTCACCGGCAAAGTAGTTGTGGAACTTGCCACCCAGCTGGGCCTCTGCAGAACGCCTGAGGATTGCAGTCAGCTGACAGAAGAATTCCTGGAGTACCAGCTGTCGGATGGCGATGAAGCCCAAGGACAGCACCCCACGGCACCCCTTTTGCAGTACTGGAGTGCTGTTTTGAGATCCACCACATCTGGAAATGTCGGACAGCTGCCCATCTTCCAGAAACTGATCCTGACTCTGCTGTCTTTGCCGTACCCCCCTTTGGAAGCCAAGAAGGCCTTTGATCAGGCGGTGGAGAACGGGGACGCCTCCCTCCTTGACGACACACTGACCGAGAGTGAGCTGGATGACACCAGGGACTTGGACACCAGTGTGCTGTCAGTGGGGGACACCAGCTTGTCGATGTCCAGCCCGCGAAAGGGGGTTGCTTGCAGCTCTTCAAaTCTTACCTGGATCAagccctgtgctgtgctgttggaAAAGATGAACCATCCAGCTGAGGAAAAGCCGTCATCAAATGAAGTCTTTATTGAAGATGACATCATTTGGACTAGTACAACTCAAGAGGGGACAACTAGGGGGATTTATGGGTGGGAGACAAGCCTCCGACAGAAACCTCAAGCTCGGAAGGTCTTTCAGGCTGGTGTGAACCCCTCGGAAGATCCACAGAAAGACGACAACAGTAGCTACACAAAAAAGAATTTAGAAAGCCCTCTGATAAAAAAGGAACGCCGCACTTCGACTCCAAACAAGCCACCCAAGAAATCCTACCCATACCTGGATGGGAAGGGGTTCTTGACGGGATCGCTGGTTTGGGGGAAGGTCAAGGGCTTCTCCTGGTGGCCGGGCCTGGTTATCTACACAGAGCGGTTACTTCCATTCGCTGCGTTCTCCAAGTGTTTCTGTAACGTCTCCTTCAGCAGTCTGCCTGCTTACAAGGATGCTATTCTCCAGGCACTCGagCTGGCCAGTCAGAGAAGTGGGAAGATATTTCCACCCTGTAAGGCGGACAGTAAGGATGACAAACTGAAACCCATGCTGGAGTGGGCCGTTGAGGGCTTCGAACCAAAGGGACCCGAGGGCTTCAAGTCCCCTGATACGCCTGCCACGCCAGTGAATAACAAGCCTGACGTGGTGGAGTCACCAGTTCAGGAGTACCAGCCCCCAgccaaaaaacagaaatacatctgCAAGAATAAAAGCGTCGTTGAGCAGGACTACACAAGAGagcAAATGGTCGAGGAAGTTTTGTCCAAAGGAAGAAATATACAAGAATTTTGTCTCTCTTGTGGGACGTCACAGACTGAGATATGCCATCCCCTCTTTGAAGGAAGTCTCTGTCTGAAATGCAAGGATAACCTGATTGAGACCCTGTACAGATATGATGAGGATGGGTACCAGTCGTACTGCACAGTATGCTGTGCCGGGCTCGAGGTCATTCTGTGTGGCAATGCCAGCTGCTGCCGGTGCTTCTGCGTCGACTGTCTGAATATCCTGGTGGGGCCAGGCACTTTCGACCGACTGAAGGAAGTGGACCCCTGGAGCTGCTACCTGTGCCTGCCCTCACATCGCTACGGCATCCTGAAGAGGAGGCAGGACTGGAGCATCAGGGTGCAGGAGTTCTTCATCAACAACAGCGCCATGGAATTCGAACCTCACAGAGTTTACCCATCAATCCCTGCCAGTCAGCGAAGGCCCATCAGGGTCCTGTCCCTCTTTGACGGCATTGCAACAGGCTATTTAGTTTTAAAGGATCTGGGTTTTAAAGTTGAGCGATACATCGCTTCAGAAATCTGTGAAGACTCCATTGCAGTCGGGATGATCAAACACGCAGGGAAAGTTGAACATGTGAATGACGTTCGAACCATTACAAAGAAGCACATTGCTGAATGGGGTCCCTTcgaccttttgattggaggaaGTCCTTGCAATGACCTTTCAATTGTGAACCCAGCTCGAAAGGGCCTTTTTGAAGGCACTGGAAGACTCTTCTTTGAATATTATCGAATGCTGAACATCTTGAAACCAAAGGAAGGGGACGACAGGCCCTTTTTCtggttatttgaaaatgtcGTGGCGATGGGGACCCGTGACAAAACCGATATTTGTCGATTTCTAGAGTGCAATCCAGTGCTGATAGATGCCGTCAGAGTGAGCCCCGCACACAGAGCGCGCTACTTCTGGGGGAACCTCCCTGGAATGAACCGGCCCATCGCGTCGTCTTTGAACGATAAAGTGGATCTCCAGGACTGTCTGGAACATGGAAGAAAGGCAAAGTTCACCAAAGTCCGTACCATCACTACACGGCCCAACTCCATTAAGCAAGGAAAGTCCGAGATCCTTCCGGTTGTAATGAATGGAAAAGAAGATAATCTGTGGTGCACAGAGCTAGAGAAGATTTTCGGCTTTCCCAAACATTACACGGACGTGAACAATATGGGCCGTGGATCTCGTCAGAAGGTCCTTGGGAGATCCTGGAGCGTCCCAGTAATCCGACATCTGTTTGCACCCCTGAAAGACTACTTTGCCTGTGAATAGCTACGACAAtgcaagcacacaaacaaaacctcAAGGATCTTAGGGCTACTCTTTAGAGTTTTGTAGCTAGGCAACCGCAAGAAAGAGAGTGGCTGAGGGGCTGAGGGGCACGGGGGGGACTAGTGAGCGctcccctctccctgcctccaaaaaaaaaaatccttaccAACGTTTCACCAAACACCAATTCACAGACAGGTTACTGTTTGTATGATCTGATTAGGGTCAATTATGAAagctatttaattttgtttgttctagTTGCCCCCCTGtcccaggtttttttttttcgatgaCTTTTTTTACTTCACTGGTCACATGATACAGCACTGCAactttttgtttgcagtttttgttgtagtgtttttttttttcttctacacacagtatttgaaatgcatcttaTTGTTATTGGAAATGACTGTCTAATCTCGGCCTACCTCAGTGTGGTGAAATCCTGTGTTCCAAATAACTGGAACTCTATTTATAATCTGTCCACTACAAGTATTTCATTTCATAGAGTGTGGGTCTGTTATGTAGACTGGGTGCAGTGAATTctccaatttaaatgtttacctctcaatctgtttttaaactatttaagaTGACGGTTCTTGTGCACAGGTGGCTAACTTTGTGccctgaatgttttaatttgaatatcaGAAAATAATCTAACTGACAGTTTTACAAACTCAGAGCTGGAAGCCCAGTTCAGGTTAACACTATTTGCTCATCCTTATCACCAGAACTGGGAGTTCCTGGTTTTGTTATAAAACTAATCAAGCAATCTGTAtgaatggggtgggggggatttctCTCACAATTAATCGTTTAATGACTGTCTAATCatgaacaaatttaaaatgttgtatttgtgtttctaaGGAAGTTGATGCAACTGTCACTGATTTTTGTGGGAACCCCGTAAATAAACCCAAAGTAAATTAGGTTTTAAGAATACTTTATAAAGACTGAGCATCTGACATTTTAGGTTAGACATTACTCTTTGGAATTTGTTCAGTCATAAGATGCCATAAGATGTTGGAGTTTAATTTCATAGGACAGACTTCATTATATTGTATAAGTGAGAGAATTCTTTTTATGTATTCACAATCATCAAGTGATGAGTGGAAATCACACGTCAAATTATGCATGACTGGATAAAGCCCTTCTTCATTTTAATCTTGACATATGAAGTTGTTCCCCAAGAAATACACACAGTGATATTTGGATTATTTAATTCACATAAGACAATGATTCTACAAGACATCAAGAAAAAATAGGGATGGCTgattataaaaaatactttttatacaattttaagtGCCTGCCAtgtgtaagtaaaaaaaaactgtgcacTGTGAATTTAAGATGCATGGTTTAGTATATCCTGGCAGCAATTTTAACTATTCAAAGGATCTTCTCCTGTGGAGCACCATGTGTAATCGCCTCACACCAGCATGTTAAGAGCATTATTTCCTATTGTATTTAGCATAAAACTATTATGCATTACCATCCTGTCTTAAATATGAAGAAtgtctttttctgccatttttaaGTATAACAACACTTGacttttataatgttatttttaaacattttgtttttgccaacCAGGTTTTGGGGGAAATTGTGCATTAAGTAtcacttaattgaaataatttgtcgGGTGTCCATAGCCTGACCATTCAGGGTAGCACGATTCTGcctgaatacatttaacatgacTTAGGTACTGTATAGATTCAGTATTaagctttttgttattttgtttacctGTTTGCAGATTTTTAGAgcctatttttttgttttgtttgtcccCCTGCCTTATGGGCAGCATAATTTCAGATCCCCATGCAATGCAATGTTAATACTGTAACTGTATCTGGTTCTGTGATGCTTTCTTGGAATAACATGAAAGGGgctttttgatattttaagtCCACATAAATCAGGTGCTAAAAACAACGACTATCTTGAAACAATATGCCACTGTGCCATAGCAAAGAGATCTTTGTAGGCCTTTCGGTTACTGATGTCTCTGTACTGTTTTTACAATACCTCATAGGAATTTGTAAGGGTCTAGGGTATTTTATAATCCTATTGGTGCTACGTTTTTACTTTACTGTTAGACCTTTTTCAATCTGTGTacggttgttgtttttttgttcgtttttttggAATGGGGTTACATGTATcatcaatgaatgaatgaatgacaatGTAATGTCTCGG

Function

GO: NA

KEGG:

id description
K17399 DNMT3B; DNA (cytosine-5)-methyltransferase 3B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35233 lncRNA upstream 168479 40761266 ~ 40761633 (+) True G28143
TU35231 lncRNA upstream 171102 40758698 ~ 40759010 (+) True G28141
TU35229 lncRNA upstream 174136 40751475 ~ 40755976 (+) True G28140
TU35194 lncRNA upstream 208421 40663972 ~ 40721691 (+) False AMCG00008051
TU35105 lncRNA upstream 652425 40277414 ~ 40277687 (+) True G28032
TU35274 lncRNA downstream 28750 40977654 ~ 40978428 (+) True G28174
TU35273 lncRNA downstream 67463 41016367 ~ 41017248 (+) True G28173
TU35282 lncRNA downstream 69340 41018244 ~ 41019386 (+) True G28178
TU35343 lncRNA downstream 180232 41129136 ~ 41129628 (+) True G28234
TU35380 lncRNA downstream 250549 41199453 ~ 41201854 (+) True G28263
AMCG00008057 mRNA upstream 7298 40896616 ~ 40922814 (+) True AMCG00008057
AMCG00008050 mRNA upstream 184847 40724357 ~ 40745265 (+) True AMCG00008050
AMCG00008051 mRNA upstream 208367 40711479 ~ 40721745 (+) True AMCG00008051
AMCG00008049 mRNA upstream 220263 40698024 ~ 40709849 (+) True AMCG00008049
AMCG00008046 mRNA upstream 269066 40649143 ~ 40661046 (+) True AMCG00008046
AMCG00008062 mRNA downstream 1308 40950212 ~ 40959551 (+) True AMCG00008062
AMCG00008059 mRNA downstream 14245 40963149 ~ 40975884 (+) True AMCG00008059
AMCG00008060 mRNA downstream 44817 40993721 ~ 41013873 (+) True AMCG00008060
AMCG00008064 mRNA downstream 162152 41111056 ~ 41118960 (+) True AMCG00008064
AMCG00008065 mRNA downstream 174999 41123903 ~ 41128874 (+) True AMCG00008065
TU35066 other upstream 682874 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 870726 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 1095176 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 1425735 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 2221197 38692739 ~ 38708915 (+) True AMCG00007970
TU35555 other downstream 1043955 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 2156809 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 2197869 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 2343692 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 4074244 45023148 ~ 45036416 (+) True AMCG00008177

Expression Profile