RNA id: AMCG00008062


Basic Information

Item Value
RNA id AMCG00008062
length 3546
RNA type mRNA
GC content 0.40
exon number 6
gene id AMCG00008062
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40950212 ~ 40959551 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGATAGGCAGAGCATTGCTAGTGCAGAGAGTGACGGCAAGAAAAGGGCTGGAGCTGCGTACTGCCAGTTTATGGACATGCTGTTCCCTGGTTGTATACCTCTGAAGAAAGTAAAATTCCAGGCCAAACTAGAACATGAATTCATTCACAACTTTAAACTGTTGCAAGCAAGCTTCAAGAGAATGGCAGTTGACAAAatTATCCCAGTggacaaattaataaaaggaAAGTTTCAGGACAATTTTGAGTTTGTGCAGTGGTTTAAGAAATTTTTTGATGCCAACTATGATGGGAAAGATTATGACCCAGTAGCAGCTCGCCAAGGACAGGAAACCATGCCTATGCCCAACCCCGCCACACCCGCCCTGAACAAGCCCAAGAAAATCCCCAGCACTGGCAGCGCAGCCCCTCAGAGGCCTTCCGTGGCGAAGGCGCCCCCGAAAGTGGCTCCTGTGGGTCTGCGGAGACCGGGCGGTGCAGGAAACGGGGACGAGGAGAAGGCGGAACTCGTCCAGGAGGTTAATTTACTAAAACTCACAATTGAAGacatggagaaagagagggatttTTACTTCGGCAAACTGAGGAATATTGAACTGATCTGCCAAGAAAAGGAAGGGGAGAACGATCCCACACTGCAGAGGATTGTTGACATCCTTTATGCCACAGATgAAGGATTCGTCATACCAGATTCTGAATCTCAGGATCAAGAGGAATACTAACATTCCAGACTGGATGTAACTTATAGACCACCTGTACCCCCCCATCAGATCATGTTATGCATTTGGTTCTGATTGAACTTTATATCAAATTGTTTTGtcggcaaaaaaaaaaattgaagtacCTCTTTGACCCTTGACCTGAATAAATCTAGAATTCTGATGACAGCAGAACTGTAATTTGTTTccagcaggggaaaaaaatcgaTGACATTCTGTCTTCAGACCTCGCTTCACGTTTTCTTTGATTTTTTAGGGAAGTACACAGGTGTTTGGCACCTtcaatgtttgtcttttgtttgttcttaaagCTTTGTCACCTTCTCACTGTTGTACTTTTATAGAAGTCACTTTCTAAAATGTTCTGGTTTATGGATTATTAAATATTGcagaaatgtacttttttttttattacattttaaaagcaaaatatcaCTGTTGGGTTCAAACTTTAAAGACAGAACATCAGAAATAATTTGGAAACCTATCAGAATCTGATGTTCTgcctaaacaaaatacaagtgaGTGTCTTTGcagtttttcctgtgtttttgtatttcagcaACACTGAATTTTCAAGATTGCAAACAAAGTTACATAACTTGTATACTGTATATCTCTTATCTGCATTTTACTGAGACAGATGCCAGGACTAAGCTTGGACTGTACTTATTGTGAAGTCTTGGTGTGGTGAAGGGGTCTGTCTTTGTGAAGAGGAGAGCCATTTAGTCAGTTTATATGCAAGTAACTGAGTGTGGTTTGAGTCTGTAATTTGTTTGATGTTACTAGACAACACCTGCTGTAGCATTTTGAGTCAGATTTTTGGATTCATTCtgaacactctcacacacactgttttcaTGACATTGAcactgtttctttttattattattatttaaatatagagaaggaaaataatttgTGTCCAAGGGGTTGTGTTCAAGCTCTCCCAGGGTCCGTTACTCAGTTTTGCTTCAATACTGCCATTCTTCTGTATcggaaaacaaaaaattaaatagaactgacttcttttttttttcttaaataaactgtttattagtGGTAAATGTTCTCAAAGCTCAGACATtgaattttcatattttcagctcttttgtttgtgttcgattaaaaaatattgtggtGGAGCTCTCAAATGCGTCTGGCTCTTCCGCATAGGGGGACCCTTTCCCAGAGAGAAAATACCTCGGTCTTCCACATTTACAATGATCACGAGAAGTCGCATTTAGAGTATGGTTGGAGTACCCAGCAATAAATGCTGAACGATTGAGAGTAGTGTGTAGCGGACACTGATAGCGACCCATTTTCTTCTGGGAAGCATAACTGACTCCCAACGGGCATGACTTCTCAGTTGCATTGCCGTGTCTTCGTGCAACCATCGGCTCAGTATTCTGAACTTACAGTAGGGCTTCACAGTCCCACAACTTGGGAGCCCCAAGTTTTCTAGTTTCCAAGTGAGTTCTTGAAAACCTAATTCaatccttaatttaattaacaacttGCTTGGGTCCTTTTAACAGTTTCCACCTCCTGGAGACACTCAGGTTACGTATAAAATGTTACTCTCTAGTCCTTTATATGGCAGAAAAGCATTTCACAGTTCTTCTTGCGGGAATGATTTTTCTCCCACAGTAAGGGTTCTGTTGAGGGCGGTGACTGAATACTCGATGAGAATCAAAACCAGAAGACCGCACGGGGCCAAGGACTAGGATTGGGAAGCCCTGATTAGGCATTAGATTTTACTGGATATGGTGCCCTGTAGCTCAAATCTCCAAATTCTGCTGGTGTGCATAACAAAGTGCAGAATAACACCACTGTTCCTCCGAATTCATAACCGATGGATACGTTGCTTGGGTAGCTGCAGATAGTTCTGAGCATAACCCGTTAAAACGCAAGTCATGATGTGTGGGTTCGTTGGGGTTCTGGGTTTCACTTTAGAGCATTGTCCTGTCATGGGCCTTTCCTCCCCAAAGAGTTGAGTGCTTCATTGTGAAAAATGCAATTACCATTTCCACAACCCTTGAAAGACTACAGATTGCAGTTCAACTTTGACCCAGGAAGAGAATAAAATCTCATGGTAGTGTCCCCCCCTCCTTTTTTGAATTCATTTGGATTGATGACTGCAAAATATAGGCATTTGTGTCCTCTGCTAATCCCATGAAAGAGGTGTATGATCAATCCTCTTCTAGGTTTTTGACAGCTTTTGCACTGAGTCAGGAAATTCTCCACTGTAAACCagatgattgtttttttgttggtttatttgtttagaaATTGCACCATCGCAAGGACGTAAAGTAACTAGCCTTTTGGGAAAGATTTGTTAAGTGTACCAAGGTATATGAACATGTGGCTTTTAAAATCTGTAGTAATGTAAAATTCCTCATCAGTTTGTGGTTGTGCACCAATATAAGGTCAAGTGAATACTAATCTCATACCATACATGATCTTCCATTTCATtataatttgtgccaaaatcTAATTTTAGCCTTGTTCAGTCTTAGGCCAAATTTAGGTTTGCTTGCACTGAAATGTTCAATCCATTTTCTGGAAGTGTGTGTTAAGGGGAAACTTGGAAAGACTGTAAATAAAAGCAAGGAGTTGCCAAAAACTTACAGTAAACAAGCCATTGTTGAGGTGGGAAGAAATGCAGTGGTGCTATCTCTTAATGTCTCTTGTGGCCTTTTACAGTTTGTTGTCCTACGATTCTTGACACTGTGGACTATGTGCCACTATGGGTCTGTTTCTGCAGGGCgttccttttttttctgattgCTGGAATCGGTTTCTTATGAACAATAAAAG

Function

GO:

id name namespace
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K10436 MAPRE; microtubule-associated protein, RP/EB family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35233 lncRNA upstream 188579 40761266 ~ 40761633 (+) True G28143
TU35231 lncRNA upstream 191202 40758698 ~ 40759010 (+) True G28141
TU35229 lncRNA upstream 194236 40751475 ~ 40755976 (+) True G28140
TU35194 lncRNA upstream 228521 40663972 ~ 40721691 (+) False AMCG00008051
TU35105 lncRNA upstream 672525 40277414 ~ 40277687 (+) True G28032
TU35274 lncRNA downstream 18103 40977654 ~ 40978428 (+) True G28174
TU35273 lncRNA downstream 56816 41016367 ~ 41017248 (+) True G28173
TU35282 lncRNA downstream 58693 41018244 ~ 41019386 (+) True G28178
TU35343 lncRNA downstream 169585 41129136 ~ 41129628 (+) True G28234
TU35380 lncRNA downstream 239902 41199453 ~ 41201854 (+) True G28263
AMCG00008061 mRNA upstream 1308 40930112 ~ 40948904 (+) True AMCG00008061
AMCG00008057 mRNA upstream 27398 40896616 ~ 40922814 (+) True AMCG00008057
AMCG00008050 mRNA upstream 204947 40724357 ~ 40745265 (+) True AMCG00008050
AMCG00008051 mRNA upstream 228467 40711479 ~ 40721745 (+) True AMCG00008051
AMCG00008049 mRNA upstream 240363 40698024 ~ 40709849 (+) True AMCG00008049
AMCG00008059 mRNA downstream 3598 40963149 ~ 40975884 (+) True AMCG00008059
AMCG00008060 mRNA downstream 34170 40993721 ~ 41013873 (+) True AMCG00008060
AMCG00008064 mRNA downstream 151505 41111056 ~ 41118960 (+) True AMCG00008064
AMCG00008065 mRNA downstream 164352 41123903 ~ 41128874 (+) True AMCG00008065
AMCG00008070 mRNA downstream 390877 41350428 ~ 41356833 (+) True AMCG00008070
TU35066 other upstream 702974 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 890826 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 1115276 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 1445835 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 2241297 38692739 ~ 38708915 (+) True AMCG00007970
TU35555 other downstream 1033308 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 2146162 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 2187222 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 2333045 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 4063597 45023148 ~ 45036416 (+) True AMCG00008177

Expression Profile