RNA id: AMCG00008063


Basic Information

Item Value
RNA id AMCG00008063
length 8806
RNA type mRNA
GC content 0.45
exon number 13
gene id AMCG00008063
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41056126 ~ 41078139 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGAGACTCCTGGCTGGAGCAGATGGCCGGGCTTTGGGCCAGAATAAGCCAGCAGATTGCATCAGCTTGGCGGTGCGTGGGAAAGCCTGTGGGATTCGGGAGCTGGGGGTGTGCGTGTGGCTGAAGAATGAGcacagggaggaggagagggagatggacGCCCAGCCCGAGGCAGCATTAGCTCCCAGCTCTCTGAAGAAAAGGGGAGCTCGTGTGGTCAATAAAACAGACAAGAAAACATCCCCTCAGGAGGACAGCGCTGACATCAAGTGCCAGCTGCACTTCGCTAAGGAGGAATCAGCCCTCATGTGTAAGAAGCTGACAAAGATGGCCAAGGACAACGACAGTATGAAAGAGGAGCTGGTGAAGTACAGGTCACTGTACGGAGACTTGGACATCTCACTCTCGGTGGAGGAGGTGGCCGACTCCCCGCACACCAGGGAGGCGGAGCTGAAAGTCCATCTCAAGCTGGTGGAGGAGGAAGCCAACCTCCTGAGCCGGAGGATAGTGGAGCTGGAAGTGGAGACCCGGGGCCTGAGGGCAGAGATGGAAGACATGAAAAGCCAGGAGTTCCAGGGCCATCTGGTTATGGCTCCCGGCTGCTATGGGGAATCCAGGGAGAGCATGATGGAGCTGAAACGCCACCTGCAGTTTGTGGAGGAAGAGGCCGACCTTCTGAGGAGGTCGCTTTTGGAGATGGAGGAGCAGAACAAGCTGCTGATGAATGAGCTCAACAAGTACAAGTCAGAGCACGACTTGGACACCACCATGTCAGAGGACAGCTGCTCGGTGATGAGTGAGCCCTCGCAGGAGGAGCTGCTGAACGCCAAGCTGCAGATTGGTGAGCTCAGCGGGAAGGTCAAGAAGCTCCAGTACGAGAACCGGGTCCTGCTCTCCAACCTCCAGCGCTGCGACCTGGCCTCCTACCAGTCAACCAGACTCTCCATGGAGACAGACGCGGAGGCTGGGGACTCTGCTGAATGCGTCCCGAGCCAGATCCGGAGAGAAGGCCCTATCGGAGGGGAGAACGACTCCAGGGAAGATCAGGAGAAGGCGACCATGATCCGGAGCAACAGCAACCCGGACAACTACGAGGTCTGTGGCTCCCAGTGCCTCAGAAGCAAAGACTTTGATACTCTGCTCACCATCAAAGATCAGGCCGGACTCGTTAGCAAAGCCATCGAACTGTTGATATCAGACTCCAATGGGTTCTCATCCTATCCGAAGATCTGCCCTTCCATTGATTCCTCAGAGCAGGCTTTGAGCGACAGCCTTGATAGGAACGAGGCCTCAAGTGACTTAAAGCTGGTCAGTGCCCTTAACAACAGGCTGAGTGCCTTGCAGAGAGAACTAACCACCTTCATGGACAAGGTAGACAACCTCGGGGACTCAAGCAGGGAACAAATTGAAGGAGCCTCGCCGCTACCTCTTCTTTCAGAGTCAGGGAGCTTTATATCCACCATGCCTTCCGTATCCCAAGACAGCTCACCAGATGGCCTAAGCAAAGAAATCAATGCTGATCAGAAGCAGCCTGACTTTAGGGACCAATCAGAGTGCCAAGTTGGAGGTCAAAGCCAGGGTCTTCCAGAGGTGCCCCGGAAAGGCACAGAGGGAGACGACAACAGAGACAGCAACAAAGACCTCAAGTGCTACGGACGAGATGACAAGGAGACTGATACAGCCAAGCACGTGGTACAGATCAGGGAGCTCCAGACTCTTCTCTCGCAGGCCAAGGAGAGCATCCAGGGAATGCAGGAGCAGCTGTCCCAGGAGAGAGAAGCTCGCAGGGAGGACTGCGAGAGCTGCTCCCAGAAACTCCTGCAGCTGAAAGAGGAGCACCAAAAAGCCCTGGTGCGCCGTGACTTCGAGCTGCAGAGTCTGAACCTGCAGACACGACTGCAGCAGAAGTTCTGGAGCCAGGAGAGGAACCTCATGGTGCAGGAGTCCCAGCAGCTCAAGCAGAGCCTGCTCCTGCTCAACCTAAAGCTCAGGTGGTTCCTGAAGCAGTGGAGACTTGGCAAGAAGCTGGACACTGAGGGAAAGGACATTCTGGAGGTTAACAGTGTGAAAGATCTATACATGCTTATTGAAGAGGAAGGGCTGGCTGCTCACCAGCTCGATAACAAGACGGCCACCGTCGATGACCAATCCCAGAGCTCGACAGCGCTTACAGACAGCCTCGCTGACAAAAACTACAAGCAGGCGGGCGGGCTGGGCGGCGTGCTGGCAGACCTGAAGGAGGCGCTGCGGGACCTGAGCACAGAGCTGCGGGAGGAGAGTCACGGCTCTCAGGAGCTCACGCAGCAGTTCGCCAAGGCCAAGGCCTCCTGGGAGGTGGAGAGGACCGAGCTGAAGTGCCACATCACCCAGCTGGAGAGCAAGGCTGGGAAGACGGAGAAAGACACGCCAGACCTGAAAGCTGCCCTTAAGCGAGAGCGGGAGGAACACCAGCACCTCCTGGCTGACTCTTACGCGGCTGTCATGGATCTCACCAAACAGCTGCAGATCAGCGAGAAGAACTGGGGCCGTGAGAAGCTGGAGCTCCTGGAACGCTTCAACCAGGAACGGAGCCAGTGGGAACAACGCCTCCGAGACGCCCAGGCGAAAATCAGCCAGTCTTTGCATGACAAAATGTCTGAAAAAGAAACGTCCTCAGACGCAGAAGCTCAGGGAACAAATTTACAGAGGACCAAATCAGTTTCATCCATGTCAGAGTTTGAGAGCCTTCTGGATTCCTCTCCCTTCATCCCTGGCCAAGACAACAGTGATGCCaacaaagagaagaaaaccCAGCCTAGCTCACGCACTGCCTCCAAAAACCTGTCTGACCTGGGGGAGTTTAACAAGAAGAACTGGAAGTACCTAACAAATGAAATGGCCCTCTATGATAAAACTGATCCCTTCAAGACCTGGGACTGTCCAACAATGACCAGCAGCTTTGCTGGCTTAGACTTGACCCAGAAGTGCATACAGAGGAGTTACACAGCACCAGACAAGACTGGAATTCGGATCTATTACAGCCCCCCAGTGGTGCGAAGGATGGAAGCCTGCTTGtcaaagggaaaaaaggagGAGAAGATGATGGCTGAGCCTGGCTACTTATTTACCACCGCAAAGCTCCAAGAGAATGGAGAATCACAGAGCTCATCAGACAACACCTACAACAGATGGCTCTGCAACTTCTCCAAGCAGCACAGAGACCTCCTGGAGAACAACTCCACAGCAGCCACTACAGCTGTGCTGCCCGCACCCTTTCACGGCCTGGAAATGTCTGGCAACTTGAGTGACGACATGAAGGAAATGACCAATTGCGTGAGGCAGGCCATCCGCTCCAGTTCACTGGAGAGGAAATGCAAAGACACTGCAAGCCAGACTGTGGGGGTTACCACCACGGGGACTCAGACCACACAGTTTGTCAGCGTTGGACTACAGACTGAGGGCCCAAGAACCAGCCTGCACACCAAAAGCTGGTCACCCAGGAGCTCTTCACTGATGTCAGCTCGCAGCAGGCAAATCTCCACATCCTTAGATAAGGTGCACAGGATTGAGCGTCCATGCTGCTCACCAAAGTACGGGTCTCCCAAGCTGCAGAGAAAGGTGTCAATGTCATCTTCGAAGTTGGACAGTGCCAAGGACAGGAGCCTGTGGAACCTTCACCACCGGGGGCAGAATGGGTCAGCCTGGGCCAGGTCAACCACCACAAGGGACAGCCCAGTGCTGAGTGGCCTCAATGACGGGCTCTCCAGCTTGTTCAGCGTGGTGGAGCACAATGGCAGCACAGAGTCGCTGTGGAAGGGAATACCCCAGGAGAGCAAATCCAAGACTGAAGTCCCCAAGTATGGCATAGTCCACGAGTTCTTCCGAAACGTCTGTGGCAGGGTACAAACACCCATGCCCCCAGCCGACAAGCAACCTAAAGACCCTGCCACCCTGGAAGATGGCAGCAGGAAGCCAGACTGCTTTGCTGCTGCCTCAGTGGCAGGCGCCCAACCCGACCACGTGACAAAGATCATAAACAAACGTCTTCTGAAGCAAAGCCTCAGAGACGAACAAGCCCACGGCATCAAGGACGCTATTGCGAGAGAGATGAGCATGGCATCCAGTGCACATGAGGACGCTGCCTGCGACTGCACCTCTCAGTCACTCACGTCTTGTTTTGCCCGTCCCTCGCGGTCGATCACACGCCACTCCCCTGCCCAGTGTAAGACGCGCTCAGTGGAGGCCGGGACAGCGGAGGAGAAAGGAGACCCCCCTGAGTGAAGGGAGCGCTGGGGACGACAGAGTTGCCACAGAACCTGCTGCCAAGGAGGAGGAATCCAGACTTTCTGAAGCCACTATGTTCACAAACACCCAGcagcaaaaacagaagaaaaatcaaagaGAATGTCTCCACACGTTTCAGAAACTGTTGTTGTTGgattttgtttgtagtttttgtaCTGTATTCCTGTGTTACTCATGCCAAGATTCCCACAGCATTCCTGTTCATATTTCAGATAAAGGGTGCACAACGTCTTGGACTACATTTCCTTAAAATGCTTCATGAGAATTTCTCTGGTCGTCAACGATTCCAAAACTTGATACATCCACACCTCAAAAATCGCAGTGATACCAGTTTGGAGGAGCTAGGTCTTATTAAGAGAATAGCTCTACTACTCTGGGGATTCATTTCTGTTTGCAAAGATTTAACTCACATGTTGTTTAAAGAATAATATGTTTCAATCGATATCTTATTAAATCAGTGTTCGATATTCATGGGACCTCTTCTAGACAACTGCCTTCATTCACTTTGTCTAGGAACCGCCTAACacactaattaaattaaactttaaaagaaGCATTCCTTTGGACACATACGACAAACTGTGTGAAAAGGGACCCatcattcttaaaaataacttgaataaGATAGGATAGTTTACAGGACTTCTACTGGATAGATATCGCAAATCCTTGGAAGTTGATTCCCTCTTTTCTGCTACTGGAGAAACATGCCTTCTGTCTGATGTACTGGAGTTGAATAGAATTAGTTTGAGACAGTAAATATAAACATACCCAGGACCAGCTCTGAATTAACGTTCATATTTCTGTGGGACATGTTTAGGGAACTGTAGAATGTCTTGATGTCAAAACATAGCATAGTCAGGCACCTCAGTTGCGTGTGCGTGTTTGATCACGCGACGTTGTTAACATACTAGTACGTTCTGGTACCATTTTCTTGAAAAAGCCATCAGAACCACGTACTGGCTGTAGCTTGAGACTAATCTAATTTATTTCTTCTTGTCTCTCCACCCCCACAGTCGAGACTTGAGTATGTCTTTCTACAGATCCGCTCGGTAGTAGTAGAAGGTAACACAAGATTAAGCTTTTCCATGAAAAAGAGCCCGTTTCAAGTTGCTACTTGCAAGAGTGTTTTCCACACTTTTTGCACAAGCCCTTGTCTGTCCTTCAATTAACTCTCCTGTAATTTCCCAAACGCTTAAGGttacttaaaaatacaacaaaaataaaaacacaagacagCGTTCTCTCCAGATTCTGACAGGAGAATGTGATGTCcttttctgattatttatttttatttggtggtatagttatatttgttttctgttgatatttttaaatatcttttattttacttgaaataTGAATGTCATCTTTTGTTCTGGCTTGACATTTTTCCTGTTACATCATTCTGAGTCTACCTCGTCAGACTGAGAAAGCATCACCGTGTTTATCTCAGTTTGCAGGACACCTAGCCTCAGAACTGCGTGGCCATCACAATATGACAATAAAATATCCAGgaccaagtttttttttcttttcgttttttttttttcacaaaagcCAACGAAATAATGACATATGCTGAATTTTATTTCCTACTGAAGAACTGaaactatatttgtattattttgatacCAAGggaattattttcaatttaaattattgttgtttttataaacacacatatgtCTACTCTCAATGGTGCTGGACAAGCAATGTAGGTTAAACTATGTTGCATGTGCTTTgaagcaaaataattattttttaaatatcaattgtTTCTACAGTGGCTTCTAACCCTATACAACATACATGGATGTACACTGTATACAGCATCACTATCAGACTTGATTTTACTGCAGCTCATACATGAAGTCTAAATCAGTAATGCTCTGCAACAATTCACAATATTACTTTTCTAAAAGTActgtttaacatttaatatattcatttcaaaatgccTTGTGGGTAGATGATATTCAGTGCATTTCACTCTGTACAGACGTCTGAATTGGTTGTTCTTTTGTAGTTCTACTAAATAagataaatacagtactgtgctcaTTTAAGGAGGGAATatacaagtttattttatatatgaaaaaactGCAGAACTACAGGCTAACAGTTactattataattgttttttctaatgttaattattttataattttgtattttttaatttacctaTTAAAAAGGAACATAGCATaacttattatttatgttatggATAACTATTTTACTACAAATGGAAGGGAAATCAGAACTGGAGGTACATTATTTAACTACAAggtaaagtttaaaattaaattgagtacagaaaaataaaagccaaaACAATGGCCTCAAATTAATGTTGCACATATTTCCTGATGCCCAGAAAGTACAAGATTACttcttacattttgtgaattaGGCTAGGAGGCAGAGTAAAGTCAAGACTGTcgaaacataaaataatcatcGTAATTTAGGGTGCTGCCTTTGAGTTGTTGCTACCACTGCTACCTCATTCCCTTTCCTTGATAAAAGCAACCTccccatttatttttcctgaagTCAAACGGAAGTCATTTTTTCAGAAGCACACACGTGCCTTTATTATCTTCTGTAAAATTAAGTTTAGCACTTTATACAAATACCCTCATCTGCTGATTTCCTGTGTGACAGTTTCTTTCCCTGCTATTGTGTTACTGGGCTTTCTTTCTCTTGTCAATCCTCATTAACGTCAGAAATAAAGAGATTCataaggaaaagaaaagcagtttgaCACATTGCAGAGGCCTGGATTTTCCAGGATGCTGCAGTGGGAGCTGCATGGGAATGTCAGTGAAATCCCtaataaaacattgttgcaTATTTGTAATAGTGACttttttttacccatttatatgGATACATTTAGGTTAATATATTGGATATGCTTTGAAATACAGACACTAAGTCTCactacacatacactcacacacatacaggtaTAGTATATTTGAGTCTATAAAATAACTCATCCTATAACAAGGAAGTGATAGAATACATTCACCTTTGACCTTCCATTACCTAACTTCTCATCTTTTCACAGAATTAGAATTGCAAAGATCCGAGATAATGTATTATCATGTACCTGTGTTTCAGATGCATCTCCAGTGTATTTCCTGTCAGAGTAAATGCTAAGGGTATCCTGCCTACAGTAGTATAGACTTGGACAGTGTAAGGAAATGAGGGCAGTTTAAACCTAGGAAAGGGAATGCCGTAGTGACAGCTGTTATAAAGTTCAGCCGATCCTGTGGGAACGATCCTGTCTGCAATTCAGTTTATACCCAGAATGACTGAGAACAGGGGATGGATTCTGAGTCAAAACACAACGTCAAAAAGTGGCCCTGATGGAATCTCCTCTTTTTGAACACATGTAAATGACCAATCTGGTTTGTTAACCAcctttttttctaaatattgtgtaaaaaagaaaaagacaaaaaaatatttaaaaaattcccccaccccccaaaaaaatgtttttaaaaaacattgtaaatactTCAGAGTTGCAgccttttattgtttattgatttttttttgtaatttgagtTGGTGTtgcatcattttaaatcaaaacagctgtttttgtattaaagcCTTTCCTATCAATCCAACTGAGGCGGCGACCTTGTCTTTAGCAAGGCACTGTACTGGAGCCATCAGTTTTGCTATTCCCTCTCCGTATCATGTGCAAGATGTACACCCTGCAGAGGGCTGTACTCTGGAAAGTACTATGTATTGGGCTTGGTTGTAAAGATCATTGAGAGCATTcaaaatatacacagtactCAAGTGTGTACACGTACGACTTTTCTGTTCCCACCTACACACTCTGGCTGACATTTACTTATTCCATATTTTCTATTCACCCGACCTATGCGTCTCTGAGTACAATCGTTTTTAAAGTACGATACTGACCTAGAGGCAtaatattcagaaatgtattgatCTAAAATGATCTTTGTTGCACAGCCTTAGCGCACCGTTCCACCAAGTGTGCTTTACATAAACTTGTGCCATGTCTTAAACACTCTCATAAATTTGGTTTAGGTTTCAGATTATCTGGTAGACAATTTTAAAGATGTAGCTAtacttcaaataattatttttagttttcattgttaatatttgctaaattatttccaaatgcctgtacattttccttattttaatattttggctCTACGCTCCGTAATATTGTaacttaaacaaatataaacataatttatactCTTTCTATCCTTGCATAGAAAGAGCTGAATGTCTTTGATGAGTTTAAGCCTCACTGTCGAAGAAGCATATTAGCCCTCTccttcacagacagacacaaacatttctgtaaataagATTTAAACTCTAAACTAGACTTAGGATTGGGTTATGTGTTGGGGAAGGGTCTTTTGAACTGTGAAATTTGTCAGCTCAAAGATCATTGCTTATTGTTTGTCATTGTTCACAATAAATGTTCATTGCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35311 lncRNA downstream 12079 41043696 ~ 41044047 (-) True G28206
TU35308 lncRNA downstream 36704 41018244 ~ 41019422 (-) True G28203
TU35294 lncRNA downstream 71222 40983619 ~ 40984904 (-) True G28190
TU35228 lncRNA downstream 305683 40748306 ~ 40750443 (-) True G28139
TU35203 lncRNA downstream 388264 40663917 ~ 40667862 (-) True G28119
TU35353 lncRNA upstream 50999 41129138 ~ 41129628 (-) True G28241
TU35434 lncRNA upstream 282005 41360144 ~ 41360468 (-) True G28308
TU35435 lncRNA upstream 286623 41364762 ~ 41366616 (-) True G28309
TU35443 lncRNA upstream 327652 41405791 ~ 41412224 (-) True AMCG00008076
TU35456 lncRNA upstream 549222 41627361 ~ 41627752 (-) True G28325
AMCG00008058 mRNA downstream 73436 40981896 ~ 40982690 (-) True AMCG00008058
AMCG00008053 mRNA downstream 180689 40868653 ~ 40875437 (-) True AMCG00008053
AMCG00008056 mRNA downstream 207377 40847002 ~ 40848749 (-) True AMCG00008056
AMCG00008054 mRNA downstream 227610 40819849 ~ 40828516 (-) True AMCG00008054
AMCG00008055 mRNA downstream 286802 40755783 ~ 40769324 (-) True AMCG00008055
AMCG00008066 mRNA upstream 8809 41086948 ~ 41095005 (-) True AMCG00008066
AMCG00008068 mRNA upstream 50777 41128916 ~ 41189631 (-) True AMCG00008068
AMCG00008069 mRNA upstream 121485 41199624 ~ 41201818 (-) False AMCG00008069
AMCG00008067 mRNA upstream 124769 41202908 ~ 41219672 (-) True AMCG00008067
AMCG00008072 mRNA upstream 142177 41220316 ~ 41229073 (-) True AMCG00008072
TU35307 other downstream 38878 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 1551534 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 1964371 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 2000447 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 2006529 39047289 ~ 39049597 (-) False AMCG00007990
TU35381 other upstream 121350 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 768794 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 1682865 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 3339735 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 4972556 46050695 ~ 46054346 (-) True G29301

Expression Profile