RNA id: AMCG00008066


Basic Information

Item Value
RNA id AMCG00008066
length 1359
RNA type mRNA
GC content 0.61
exon number 4
gene id AMCG00008066
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41086948 ~ 41095005 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAAAGACCAAGGCTGACGTGAAAGTACCCATTCATTTGGTCTTGCTCAAGGACAAGAGACAGAAAATGGATAGTGCCAATGGGAACAATGACCTGTGTCCGCCGCCGCACCAGTTTCAGCAGCAACCGACAGCCCCGCAGCAGCAGCCCGGCGAGAAGAAAAAGGTGAATCGGGCTCCTTCCCCGGCCAGACCCAAAGATGTCCCCGGCTGGTCTTTGGCTAAGATCAGGGGCAGCGCCGGCTCCGGAGCGCCGACTCTGAGCGTCAAGCCCGGGGGTATCCACTTGGGCAGCCGGGTTTCCAGGCGCAGCCCCGGCGGTGGCAAGGAATCAAAAGCAGACAAAAGCCGGGCGTCTGCGAAAAGCTCGCTGGCGGCGTCCGGCTCTCACAAGCCCGCTCACAACGCGTCCAAGTCGGCGAGGAGGAAGATTTCCGACGCCAGCAGCGCGTCCGAGGATCTGAGCAAAGACTCCGGCTGCGCGGCGGGGAAGCGCTCCCCCACGGACAGCAGCTCCGAGCTGTCGGACTGCGCGTCGGAGGAAAATAAAGTCTCCACCGACGCCCTGAGCAGCGACACCGAGTCCAGCAGCCGAGGAGAAAGACACGGCAAAGACCACGGGACGGGGCTCTGTGACGGGGACTCAAGCGGGGATGCGAAGCTCCCCGTGGATAAAGACCGCCTGGCCCTGGGAGTGGAGACCGCGGAAGACGGCGTCTCGCCCGGGGACGAGCGGTCTGTCGCCTCCCTGGACAGCCGCCTGCACGTCAGCACCTCCCTGGCTTTTTCGGACCTCACGGAGGAATTTATGGACGGGATGCAAGAGGAATTGGTCAGGGAGATCGAAGAGCTAAGATCTGAAAACGATTATTTAAAAGATGAGATCGAGGAATTGCGCTCGGAGATGCTGGAGATGCGAGACATGTACATGGAAGAGGATGTGTACCAACTCCAGGACCTCCGGCAGCAGCTGGACCAGGCCAACAAGACCTGCCGGATCCTGCAGTACCGGCTGCGCAAGGCCGAGCGGAGGAGCCTGCGTGTGGCTCAGACCGGCCAGGTGGACGGGGAGCTCATCCGGGCCCTGGAGCAGGATGTCAAGGTGGCGAAGGATGTCTCCATCCGCCTGCACAACGAGCTGGACGGGGCAGAGAAGAAGAGGAGCAGGCTGGAGCAGGAGAACGAGGACCTGAGGCAAAGACTCATCGACCTGGAGGTGGCCAAGCAGGTGCTGCAGGCTGAGATGGAAAAGGCCAAAGAGTGTGCAGAGGACAGTGCTGCTCCTCGTAAAAGGGTGTGGAAGCGTATGGCAGAGATTCCTGGAATAGCTTCCGGGCACAACTCGCTGTGGGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35311 lncRNA downstream 42901 41043696 ~ 41044047 (-) True G28206
TU35308 lncRNA downstream 67526 41018244 ~ 41019422 (-) True G28203
TU35294 lncRNA downstream 102044 40983619 ~ 40984904 (-) True G28190
TU35228 lncRNA downstream 336505 40748306 ~ 40750443 (-) True G28139
TU35203 lncRNA downstream 419086 40663917 ~ 40667862 (-) True G28119
TU35353 lncRNA upstream 34133 41129138 ~ 41129628 (-) True G28241
TU35434 lncRNA upstream 265139 41360144 ~ 41360468 (-) True G28308
TU35435 lncRNA upstream 269757 41364762 ~ 41366616 (-) True G28309
TU35443 lncRNA upstream 310786 41405791 ~ 41412224 (-) True AMCG00008076
TU35456 lncRNA upstream 532356 41627361 ~ 41627752 (-) True G28325
AMCG00008063 mRNA downstream 8809 41056126 ~ 41078139 (-) True AMCG00008063
AMCG00008058 mRNA downstream 104258 40981896 ~ 40982690 (-) True AMCG00008058
AMCG00008053 mRNA downstream 211511 40868653 ~ 40875437 (-) True AMCG00008053
AMCG00008056 mRNA downstream 238199 40847002 ~ 40848749 (-) True AMCG00008056
AMCG00008054 mRNA downstream 258432 40819849 ~ 40828516 (-) True AMCG00008054
AMCG00008068 mRNA upstream 33911 41128916 ~ 41189631 (-) True AMCG00008068
AMCG00008069 mRNA upstream 104619 41199624 ~ 41201818 (-) False AMCG00008069
AMCG00008067 mRNA upstream 107903 41202908 ~ 41219672 (-) True AMCG00008067
AMCG00008072 mRNA upstream 125311 41220316 ~ 41229073 (-) True AMCG00008072
AMCG00008071 mRNA upstream 145151 41240156 ~ 41248162 (-) True AMCG00008071
TU35307 other downstream 69700 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 1582356 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 1995193 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 2031269 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 2037351 39047289 ~ 39049597 (-) False AMCG00007990
TU35381 other upstream 104484 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 751928 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 1665999 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 3322869 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 4955690 46050695 ~ 46054346 (-) True G29301

Expression Profile