RNA id: AMCG00008067


Basic Information

Item Value
RNA id AMCG00008067
length 5165
RNA type mRNA
GC content 0.41
exon number 9
gene id AMCG00008067
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41202908 ~ 41219672 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCTTCCTGTCATTTGGAGAATGGCGGCTGCGACCTGCAGTTCGCACAGCACATTGAACAACAATAGTAAAACGCAGAAAGAGCACCTGCGGAAGAGCAGGGACTCCCGTCGGAGGCAGGCCGCCCTCTCCTTCCTCAACAATATCTCTCTTGACGGACGGCCCGTCTATCACTTAAGCAATGGCCACCACAGAGACGCCGACTTCCAGGCTCACGACGTCGGGGTTGCCGCGGCGGTTCAGGCGGGGAGCTACGGCACCTTCCCCCAGCTGTCATCCACCCTGGGCGGGGGCGCGGCTACTTTGCCACCGAGGCTTGGGGTCGCTGGCGTACCCCCTATCTTAGTCCTGCCTACTGGGGACAGTGCCGCGATAGACAGCGAGGTGTTCCCGGAGGGAGGCACCTTCGCATCCCATGGAAGTCTCTTCTCTCCCACAGGACCTCCGCCGACCTCCCTTCTAGGGACCTGTACCAAGCCCCCCACCCTGCTCTCCGTCCAGAGCTGCAACTCCCTGACCCTGGACACCCGGCAGAGGTCACGAAATCTATCTGGCTCTCCAAAACCTCGAGGTTTGAAGAAAGTCCATTTCATAAAGAACATGAGACAGTACGACACTAGAAGCAGCAGAATTGTTCTCATATGCGCCAAAAGATCATTGTGTGCTGCTTTTTCTGTCCTGCCCTATGGAGAGAGCTTGTACATCAGTGACCCCAAACTGGACGGACAGAGGCAGAGACACTCCTCTGGGGGTGGGGCGCCCTCCCTCGACACGATTCCCAGGCTGGAAGGGGTGGAACTAGGAGCCGATGGGAAGACAGTTTCATACGCCAGATTCCTCTACCCCACCAATGCCCTGGTCAAGCAGAAGAATCCTCCAGCTGAAATTACAGTCCAGACACCCTTGTCTCGCACTAACGTCCAGAGGAACTACACTCCTGCCCGCTTCAGTGCCTCGACTGTGGCCCAGGAAGCGGGTAACGAGAGCGGGGACACGTCGGAGTACGATCCCTACCTCCTCAGCGATCCTCAGTGGCCCTGCGGGAAACACAAGAGGGTTCTCATCTTCGCGTCCTACATGACAACTGTGATTGAGTATGTGAAGCCTTCAGACCTTAAGAAAGACATGAATGAGACGTTTAAAGAGAAGTTTCCACACATAAAGTTGACACTGAGCAAGATAAGAAGccTGAAACGCGAGATGCGAAACGTTGGCGATGAGTGTAACCTTCAGCCGGTGACGGTGGCAATGGCGTTCGTGTATTTCGAGAAGCTGGTGTTGCAGGGGCGTCTCAACAAGCAGAACCGCAAGCTGTGCTCCGCCGCGTGCGTGCTGCTCGCCGCCAAGATCAGCAGTGACCTCAAGAAGCAGGACGTCAAGCAGCTCATTGACaaaTTAGAAGAGAGGTTCCGTATCAATCGGAGAGAACTGATCCCTTTCGAGTTCACCATCCTAGTCGCTCTGGAAATGGCCCTCTATCTCCCAGAGAGCAAAGTCATGCCACACTATCGCCGGCTCGTCCAGCAACCCTAGCGCGGACCACTGCGCTGCCCTCACGCCACACTGGCTCCAGAGAAGAGGAGCCACTTCGCTTTTCATCCCTGAAGTATTGAGAATTAGAAGTGAACAAATCTGTGACAATTGGCAggttttcttatattttccttttttaattttaattgtaattttcctCAGAAACAGTCTATATAATGGGTAATAAAATCCATGTGAATATACAATTAAGTTATTTAGGTTTCGGATTTAAGATGTATAATTAAAGATACAGAAACACTACTTCTGGTAACTGGCATCTCAGCCCACCTCTATCCACTGTTTCAGGGATGGATAACTGTTATGCAAACGTCAGACATTTCccaacatttcagatttttttatatgcTTTTAAGGTACGTTAATAGATTGTTTGAAAACCAGTCTGTTAGTAGTTGTTATGGAGCCTTTTAGTTTTTGTCTGTTaagtccttgttttttttttttttttccccacataaGAACCCCttaatatttgtgtgttttctccaTTAATTCCCATCCAGACTCTACCAACATGATCTTGGCTTTCAGTCAAATCCACATCTAACCGAAATGAAAGGTTTGGGAAGCCACAAAATGAttgctgtaaaaatatataaatagtctAAACAATGAAatagtttttctctctcccgTAAATAGCATTTAAATAAGATGCTATTTAAGGATAGCTGTAAACATCATTGAACCAAAACTCAGTGAAGCCAGtctgagatttttatttttttaattgctatttattttgtattggacACAGAAGGGATCTAACCAAAACAGTTATTTATCCATGAATTATCTGGTTGCACTTtggggtttttgtttgtgttcttggAAAATATTTATGCTCTGGTTATTCTTAGGctgtttttttctacatttactagaaaaataatatagcaaaattatttaatgcaattttttttatgaGTCCGACGAGTATTGGCACAGAGCGAAGCTACAAGACGTCCTATTGCCTGCTGAAAGTGTAATTATGTGCTATTTTTAATAAGTTTGTTCTTCCAAACCTTGTTATATAGAAAATAGAAATTTGGTGCACATCCAGTCAAGCACTCTATGTTAGAGATGACTTTAAGCACATTTATGGTGCTATACTGTTAAACCTTCGACATGTCTTTGACTATTTTATTAGTAACCTGTGTGTATTACTGTATGGTGTAACATTCTCCACTTACTCTGAAGCCTCTGTACTCCCTTTTTTACTTGAATGCATTGTGTAACATCCaagtattgtaatgtattgtaaataatactACTGTTAGAAAGTGCTAGTATTCATTGACGTATGCAAAAAGGGATTGCAATTAATATATGTGAAAAAGGGATTACAGTTTCTCATCAAAATGTTACCACATTTGCAATACATGCTGTGAttgtctgtactgtacatggGCTCTGAGGTTTAAACAACATGATGGTACTGAGCAATGGATGTGTGAAATATACATAAAGTGAAAgagatatatttttcttgtgctTCTGGCTGTTTTCACACCTTGTAGTTTTGTATGTTTAGTAATGTTTAGTACCAGATCAATAATAACCGTAgcattatttttccttctactgtgcattgattgtttttttttttaatgaaaatattttgtttgatagCAAATATTGTCATGGTTTCCTCTGCAGACATaagcattcaaaaacaaacaaaacggtccatgtaatgtaaacatttgcactttatttacaaTGCTTTCTGGGTTTACATTATGATATTATCAGAAAACGCCCTCTGTATAGTGATTTGATCAAACCCTCCTTTTCTAAACGTACTTGAACTCTGTTTTACCCCATACAGAGTGTTACTGGTTTCTGATGAAAGGCATGCTGAAATAACATTGCATTCAATACAGGTATAGATAGCCTCTAGAAGAGTTATCTTGTGGTTGGAAGATGCAACAACCATATTGATGGTTCAATAGGAGAAATATTCACAAAAACTAATGCAGTGGAATTATCTTTAAATGCCAACAATCATATTTTATGTTctcaggaaaaatatatatatattctttaaatgtttatatgtattttccttttaacgaaggttttaaaatgcaaaactaccTTTCTGTTGTCTTCAGTTCTAAATCTAAAGCAGAACGTATCattcttgcctttttttttaaatgtaatttctcttattttgaaattaactcAGCGGTACAGCATCACTGAGAAGTTTGTAGGCTTGCATACTACAGTGCGTCACAGAAAGTGTCTGAGTGTCATTCGAAACACCACAATTtctgtaagaaaagaaaaaagtttgttgCATGTAGATAAACTGGTATCTTTAGTAATGTCCACTCAAAGCACATGTAAAGTGAGGAACTGAAGACTCGGTAATCATTGAAACAGCTGAACATCCATTTTCAAACCTTACTGGATAGAATGCAAGGATTTGATGTGTTAATAAccattacatttgtgtttacagTTGTCCCTTGATCAGCCACTGCAGGAGATATACCTGGCTGCAATTAGTACTGTTTGAACCTCTTGTCAATCTGTATGCAATTAGCCTGCAGAGAGAATGCACATCAGAGAAACAGACTGTAGCAGGATTATATGCCTAAAAAGGACTGTCGGCATCTCTAATAAAGTCAACAACCGTATACGTATGTTGGAACTGATGTCCGTGTTGCCAGATACCATTCTGAGCGAGATCATTCAAATTCATGGCACAttgccacacactgcacagtacaAAGTGCCTGAAATGAAACTGGAGCAGATTATTTTGGTTAAATGTATGAATTCTGTCAAGTATGAAGCCAATTCGGTTAATTGCTTTGCCCTGCTCTTAGCTGGGAACTGTAGTTGGTGGTGGACAAAATGCAAGTCTTCTGCCTGATTATGCATTGACACTGTGACTTTCTTTTGACCAAAGCTCTTGCCTGGCAATGCCACGGTGCTTGTAGATGTGAGTTATGTAATAGGGGAATCCCAGCTTTCTAGGGTTTATTCCAGTAGTTGCTGTAGTTCGATATGAAATCCGcaagtgggtgggggggggtaatTAGTATTCTGAACAGTCCTGCTTTGATGCTGCAATAGCTACGGTACAATCTGCTGTGACAGTCTGCTCTTCAATACCAAGGCTACTCTACCCAAGCTctcattttaaagacaaaaactgtacaaaaaCGTATGAGAGAGGTGGAATAGTATTGGTACTGTGACTTGCTTTGatattatatcaaattaaaatgtccctttttattattataattttcattagCCTGTATGTTAAGTTTTTATTACCTCATATGTTTAGGGCCCACTGTTAATTCACTTATGTCTGCTGAGACAGTCTACAATGCTGTATTAGCAGTCATGAAATTCATAATTGTACTGTTGTGAATGGAACCGGTTTTttattgtctatttttaaatgacaagaaaaacagcttttcaaatatattttctgattatgtttaatgtatgtgACTCTGGGTTATTTGTGTTCATCACTGATCGATACActgataaaatgttaatttgttcaCATGCACTCAGCACCCCCAGCTGTATATCAAAGGTAGGGCCTGGACCTGTTCTAAACTGCATTGCGC

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35353 lncRNA downstream 73280 41129138 ~ 41129628 (-) True G28241
TU35311 lncRNA downstream 158861 41043696 ~ 41044047 (-) True G28206
TU35308 lncRNA downstream 183486 41018244 ~ 41019422 (-) True G28203
TU35294 lncRNA downstream 218004 40983619 ~ 40984904 (-) True G28190
TU35228 lncRNA downstream 452465 40748306 ~ 40750443 (-) True G28139
TU35434 lncRNA upstream 140472 41360144 ~ 41360468 (-) True G28308
TU35435 lncRNA upstream 145090 41364762 ~ 41366616 (-) True G28309
TU35443 lncRNA upstream 186119 41405791 ~ 41412224 (-) True AMCG00008076
TU35456 lncRNA upstream 407689 41627361 ~ 41627752 (-) True G28325
TU35516 lncRNA upstream 588106 41807778 ~ 41812074 (-) True G28361
AMCG00008069 mRNA downstream 1090 41199624 ~ 41201818 (-) False AMCG00008069
AMCG00008068 mRNA downstream 13277 41128916 ~ 41189631 (-) True AMCG00008068
AMCG00008066 mRNA downstream 107903 41086948 ~ 41095005 (-) True AMCG00008066
AMCG00008063 mRNA downstream 124769 41056126 ~ 41078139 (-) True AMCG00008063
AMCG00008058 mRNA downstream 220218 40981896 ~ 40982690 (-) True AMCG00008058
AMCG00008072 mRNA upstream 644 41220316 ~ 41229073 (-) True AMCG00008072
AMCG00008071 mRNA upstream 20484 41240156 ~ 41248162 (-) True AMCG00008071
AMCG00008074 mRNA upstream 90337 41310009 ~ 41310560 (-) True AMCG00008074
AMCG00008073 mRNA upstream 115906 41335578 ~ 41339688 (-) True AMCG00008073
AMCG00008075 mRNA upstream 149016 41368688 ~ 41378417 (-) True AMCG00008075
TU35381 other downstream 1083 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 185660 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 1698316 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 2111153 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 2147229 39054153 ~ 39055679 (-) True G27720
TU35536 other upstream 627261 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 1541332 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 3198202 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 4831023 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 5261274 46480946 ~ 46481898 (-) True G29361

Expression Profile