RNA id: AMCG00008069


Basic Information

Item Value
RNA id AMCG00008069
length 439
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00008069
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41199489 ~ 41201825 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTCGGCTTATGACAACTTCCTGTCTCCACGCGCTTCCTTTCCGTGTCAGCCATTATACGGCGCAGAGGTCACCGTGTGACGTTtacctgaaaataaatcaatatgcaGAACGACGCCGGTGAATTCGTGGACCTCTATGTCCCCCGCAAGTGCTCCGCCAGCAACCGCATCATCGGTGCTAAGGACCATGCGTCTATTCAGATCAACATTGCTGAAGTTGACAAAGTCACAGGCAGGTTCAATGGGCAGTTCAAGACTTACGCCATCTGTGGAGCCATCCGTAGAATGGGTGAAGCTGATGACTCCATTCTGAGGCTCGCGAGAAACGACAGCATTGTTGCAAAGAACTTCTAAATGgaagattttctttttgaagtttttttctttgtacaataaaaaaacatgaaaataaaaattgtctGAATCATTGCAAGAAT

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35353 lncRNA downstream 69996 41129138 ~ 41129628 (-) True G28241
TU35311 lncRNA downstream 155577 41043696 ~ 41044047 (-) True G28206
TU35308 lncRNA downstream 180202 41018244 ~ 41019422 (-) True G28203
TU35294 lncRNA downstream 214720 40983619 ~ 40984904 (-) True G28190
TU35228 lncRNA downstream 449181 40748306 ~ 40750443 (-) True G28139
TU35434 lncRNA upstream 158326 41360144 ~ 41360468 (-) True G28308
TU35435 lncRNA upstream 162944 41364762 ~ 41366616 (-) True G28309
TU35443 lncRNA upstream 203973 41405791 ~ 41412224 (-) True AMCG00008076
TU35456 lncRNA upstream 425543 41627361 ~ 41627752 (-) True G28325
TU35516 lncRNA upstream 605960 41807778 ~ 41812074 (-) True G28361
AMCG00008068 mRNA downstream 9993 41128916 ~ 41189631 (-) True AMCG00008068
AMCG00008066 mRNA downstream 104619 41086948 ~ 41095005 (-) True AMCG00008066
AMCG00008063 mRNA downstream 121485 41056126 ~ 41078139 (-) True AMCG00008063
AMCG00008058 mRNA downstream 216934 40981896 ~ 40982690 (-) True AMCG00008058
AMCG00008053 mRNA downstream 324187 40868653 ~ 40875437 (-) True AMCG00008053
AMCG00008067 mRNA upstream 1090 41202908 ~ 41219672 (-) True AMCG00008067
AMCG00008072 mRNA upstream 18498 41220316 ~ 41229073 (-) True AMCG00008072
AMCG00008071 mRNA upstream 38338 41240156 ~ 41248162 (-) True AMCG00008071
AMCG00008074 mRNA upstream 108191 41310009 ~ 41310560 (-) True AMCG00008074
AMCG00008073 mRNA upstream 133760 41335578 ~ 41339688 (-) True AMCG00008073
TU35307 other downstream 182376 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 1695032 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 2107869 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 2143945 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 2150027 39047289 ~ 39049597 (-) False AMCG00007990
TU35536 other upstream 645115 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 1559186 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 3216056 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 4848877 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 5279128 46480946 ~ 46481898 (-) True G29361

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042699 True 693 mRNA 0.43 5 NC_007134.7 9220486 ~ 9228574 (+)
grasscarp (Ctenopharyngodon idella) TU133485 False 359 lncRNA 0.45 6 CI01000021 3927839 ~ 3931690 (+)