RNA id: TU35381


Basic Information

Item Value
RNA id TU35381
length 581
RNA type TUCP
GC content 0.44
exon number 6
gene id AMCG00008069
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41199489 ~ 41201825 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCATGAATTCTCGGCTTATGACAACTTCCTGTCTCCACGCGCTTCCTTTCCGTGTCAGCCATTATACGGCGCAGAGGTCACCGTGTGACGTTtacctgaaaataaatcaatatgcaGAACGACGCCGGTGAATTCGTGGACCTCTATGTCCCCCGCAAGTGCTCCGCCAGCAACCGCATCATCGGTGCTAAGGACCATGCGTCTATTCAGATCAACATTGCTGAAGTTGACAAAGTCACAGGCAGGTTCAATGGGCAGTTCAAGACTTACGCCATCTGTGGAGCCATCCGTAGAATGGGTGAAGCTGATGACTCCATTCTGAGGCTCGCGAGAAACGACAGCATTGTTGCAAAGAACTTCTAAATGgaagattttctttttgaagtttttttctttgtacaataaaaaaacatgaaaataaaaattgtctGAATCATTGCAAGAATTAGACAGTCAGGAAAACCTTCAGTCTATCCTGATAAACCTTGATTGAAAACCTTGGATTCTTGTTGATACAAATTGACGTTCACCTGTACCCCGATATAACACGGTCCTCAGGAGCCCAAAACATCTTACCAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35353 lncRNA downstream 69861 41129138 ~ 41129628 (-) True G28241
TU35311 lncRNA downstream 155442 41043696 ~ 41044047 (-) True G28206
TU35308 lncRNA downstream 180067 41018244 ~ 41019422 (-) True G28203
TU35294 lncRNA downstream 214585 40983619 ~ 40984904 (-) True G28190
TU35228 lncRNA downstream 449046 40748306 ~ 40750443 (-) True G28139
TU35434 lncRNA upstream 158319 41360144 ~ 41360468 (-) True G28308
TU35435 lncRNA upstream 162937 41364762 ~ 41366616 (-) True G28309
TU35443 lncRNA upstream 203966 41405791 ~ 41412224 (-) True AMCG00008076
TU35456 lncRNA upstream 425536 41627361 ~ 41627752 (-) True G28325
TU35516 lncRNA upstream 605953 41807778 ~ 41812074 (-) True G28361
AMCG00008068 mRNA downstream 9858 41128916 ~ 41189631 (-) True AMCG00008068
AMCG00008066 mRNA downstream 104484 41086948 ~ 41095005 (-) True AMCG00008066
AMCG00008063 mRNA downstream 121350 41056126 ~ 41078139 (-) True AMCG00008063
AMCG00008058 mRNA downstream 216799 40981896 ~ 40982690 (-) True AMCG00008058
AMCG00008053 mRNA downstream 324052 40868653 ~ 40875437 (-) True AMCG00008053
AMCG00008067 mRNA upstream 1083 41202908 ~ 41219672 (-) True AMCG00008067
AMCG00008072 mRNA upstream 18491 41220316 ~ 41229073 (-) True AMCG00008072
AMCG00008071 mRNA upstream 38331 41240156 ~ 41248162 (-) True AMCG00008071
AMCG00008074 mRNA upstream 108184 41310009 ~ 41310560 (-) True AMCG00008074
AMCG00008073 mRNA upstream 133753 41335578 ~ 41339688 (-) True AMCG00008073
TU35307 other downstream 182241 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 1694897 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 2107734 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 2143810 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 2149892 39047289 ~ 39049597 (-) False AMCG00007990
TU35536 other upstream 645108 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 1559179 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 3216049 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 4848870 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 5279121 46480946 ~ 46481898 (-) True G29361

Expression Profile