RNA id: AMCG00008070


Basic Information

Item Value
RNA id AMCG00008070
length 1807
RNA type mRNA
GC content 0.43
exon number 10
gene id AMCG00008070
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41350428 ~ 41356833 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgaaatgtgttttgcaatTAACAAACTTCTTAATTACACAGAGTTTGGCTCATTTTGTCAAACATTAACGGTATGAGATCGAGGCCgacatacatgttttaaatatacgtACCAGAACTCGAATATTAATGTTGCTAAACGTATTCTGCCCAGAtgaaacctGGACTTGGTTGAAACTGTACGGAGCCGCGGTACTGCGGCAGCTCGTCGTGTATCACAGTGCCGCCGTTGGGATAGAAAGCAGGCACTCGGCGGTTGGGAAATAAATGGAGATTTTTTTAACGACGTTGGTAGCACTGCGGTAAAAGAAAATGGTGAAGGATCAAGAGGTCGAACGCATTGCcaagaagctggagaagatgGTCAACAAGAAGAGCACGgatggTGCTGCAGACTTGTTGAAAGAGcttaaaaacatcaacatgtCTTTGGAGACTTTGCAGTCTACAAGGATTGGGATGTCTGTCAATGCGGTGAGGAAGCAGAGCACAGATGAAGAGGTCCAGACCTTAGCCAAGTCTCTCATTAAATCCTGGAAAAAACTGCTTGATGGTGCTGAAAACAAACTCGACGACAAGAAGAAGGAGTGTTCTTCACCCGCCTCCTCGTCCAAAAACAGCCCGGAGTCGAGTGACCAGAGTTCAAGCAGAAAACAAGAGCCACCAAAGACACCCACTACCCCCACCACTCCAAAAATCACAGCATTCCCCCCCGCGCCGGTCACAACGGACAGCGTGCGCAACAAGTGCAGAGAGCTACTGGTGGCAGCTTTGCAAACAGACAacatgaaatataaaaccaGGCTGAGGAGCAGGATTTCCAATCTGAAAGACCAGAAGAACCCAGACCTGAGGAAGAACGTCCTGTGTGGAAACATTTCCGCTGAGCGCATTGCCTCCATGACGGCAGACGAGATGGCAAGTGCGGAGCTGAAGGAGATGAGGAAAGCCCTGACCAAAGAGTCCATACGGGAGCACCAGCTATCCAAGACCGGGGGCTCCGAAACGGACATGTTCATATGTGGGAAGTGCAGGAAGAAGAACTGCACCTACACACAGGTTCAGACCCGCAGTGCCGATGAACCCATGACCACGTTTGTTGTGTGTAACGAGTGTGGAAACCGATGGAAGttctgCTAACAAGAAGAATTCCTGCATTCCTGTCAAGATATATAAAGTGGAAAGCTGTACAGTATACAATGTTTCTTTGCATACAATTGTAGAAGGTGATTTTTGAGAAGGCACTTTGTTGaagggcatttttttttttcctgttttttattaaattgaatctAAGGTACTGTATCTGCagagcattgtttttatttggattgaGTTTGTTTTGGTTGAAGGGACAATTATAGGCTCTGCTTGGGTCTTTGTACTCTCTTTGGCATTTATAATCTGTTTGTGCCTTTTAAtgactgattatttttttctcggCTCTTCTTCACATCCTGCTTTTCAATGAAGTGTTGTTATATTCCTATATAAAGTATAGCACTGTTGCTTGTGAGGGAAAAACTGTGCTGCAAATTTCCCTTTACTTAATTTCCACTATGACCAAATGCAAAACTTGCAGCCAGTAGGAGAGAACTGTCTGAAGTGGCCAATTTTTTTTGCAACACAAATGGTTGTGACTGGATAACTCATGATAATTCCCCCCtgctgtttaaaagaaaaaaggaaactgattGTTCAGACAGCAGTAGAAGTTTaatgaaaaatgcttttttttttttttgtatgtgtatgtatccTGTTTTTCTTAAGCTTCTGTAGATTTCATTAAAAAGTTCCTAAAATTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006412 translation biological_process
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K03145 TFIIS; transcription elongation factor S-II

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35380 lncRNA upstream 148574 41199453 ~ 41201854 (+) True G28263
TU35343 lncRNA upstream 220800 41129136 ~ 41129628 (+) True G28234
TU35282 lncRNA upstream 331042 41018244 ~ 41019386 (+) True G28178
TU35273 lncRNA upstream 333180 41016367 ~ 41017248 (+) True G28173
TU35274 lncRNA upstream 372000 40977654 ~ 40978428 (+) True G28174
TU35424 lncRNA downstream 7762 41364595 ~ 41366619 (+) True G28298
TU35425 lncRNA downstream 9893 41366726 ~ 41368640 (+) True G28299
TU35426 lncRNA downstream 14033 41370866 ~ 41371821 (+) True G28300
TU35427 lncRNA downstream 21218 41378051 ~ 41378293 (+) True G28301
TU35429 lncRNA downstream 31750 41388583 ~ 41388784 (+) True G28303
AMCG00008065 mRNA upstream 221554 41123903 ~ 41128874 (+) True AMCG00008065
AMCG00008064 mRNA upstream 231468 41111056 ~ 41118960 (+) True AMCG00008064
AMCG00008060 mRNA upstream 336555 40993721 ~ 41013873 (+) True AMCG00008060
AMCG00008059 mRNA upstream 374544 40963149 ~ 40975884 (+) True AMCG00008059
AMCG00008062 mRNA upstream 390877 40950212 ~ 40959551 (+) True AMCG00008062
AMCG00008077 mRNA downstream 201587 41558420 ~ 41563189 (+) True AMCG00008077
AMCG00008081 mRNA downstream 413117 41769950 ~ 41789678 (+) True AMCG00008081
AMCG00008080 mRNA downstream 443416 41800249 ~ 41812742 (+) True AMCG00008080
AMCG00008083 mRNA downstream 464835 41821668 ~ 41821994 (+) True AMCG00008083
AMCG00008084 mRNA downstream 469907 41826740 ~ 41832892 (+) True AMCG00008084
TU35066 other upstream 1103190 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 1291042 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 1515492 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 1846051 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 2641513 38692739 ~ 38708915 (+) True AMCG00007970
TU35555 other downstream 636026 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 1748880 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 1789940 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 1935763 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 3666315 45023148 ~ 45036416 (+) True AMCG00008177

Expression Profile