RNA id: AMCG00008074


Basic Information

Item Value
RNA id AMCG00008074
length 552
RNA type mRNA
GC content 0.62
exon number 1
gene id AMCG00008074
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41310009 ~ 41310560 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCGCTAAATCGGATGGAGCAGCCGTGTCTGTGCAGAATGAGAATCCATCGCGGAGTGTGGCAAGCCCGGAGCACCGTCCACACCAGTACCGTCATGCCGGGAAGCGCTACTCCCTCCTGGACTGCTGCTGGGTCCTGTGCGCCCTCTTGGTCTTCTTCTCGGACGGGGCCACCGACCTGTGGCTGGCGGTGGACTACTACCTAAAACGGGACTACTGGTGGTTCGGGCTGACGCTGGTGTTCGTGGTGGTTCCCTCCGTGGTGGTTCAGGTGTTAAGTTTCAGGTGGTTCGTCTACGATTACTCGGATAGCAGCAATAGTAGCGGAGCCGCCGCTGTCAGCGCGGCCGCCGCAGCCGCCGCAGCTTCGGGAGGAGATTTCAATTTCAGCACCAAGGGCAGCGATCAGCGGGGCGCTGGCAGCACCGGCGCGGCGAGGGCATTGCCTACAGCGGGCAGCAGGAGCGGCACCCAGAGGTGCTGCAGAGTGTGCATGTGGCTCTTTCAGTCGGTCATCCACATCCTGCAACTGGGACAAGTCTGGAGGtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35353 lncRNA downstream 180381 41129138 ~ 41129628 (-) True G28241
TU35311 lncRNA downstream 265962 41043696 ~ 41044047 (-) True G28206
TU35308 lncRNA downstream 290587 41018244 ~ 41019422 (-) True G28203
TU35294 lncRNA downstream 325105 40983619 ~ 40984904 (-) True G28190
TU35228 lncRNA downstream 559566 40748306 ~ 40750443 (-) True G28139
TU35434 lncRNA upstream 49584 41360144 ~ 41360468 (-) True G28308
TU35435 lncRNA upstream 54202 41364762 ~ 41366616 (-) True G28309
TU35443 lncRNA upstream 95231 41405791 ~ 41412224 (-) True AMCG00008076
TU35456 lncRNA upstream 316801 41627361 ~ 41627752 (-) True G28325
TU35516 lncRNA upstream 497218 41807778 ~ 41812074 (-) True G28361
AMCG00008071 mRNA downstream 61847 41240156 ~ 41248162 (-) True AMCG00008071
AMCG00008072 mRNA downstream 80936 41220316 ~ 41229073 (-) True AMCG00008072
AMCG00008067 mRNA downstream 90337 41202908 ~ 41219672 (-) True AMCG00008067
AMCG00008069 mRNA downstream 108191 41199624 ~ 41201818 (-) False AMCG00008069
AMCG00008068 mRNA downstream 120378 41128916 ~ 41189631 (-) True AMCG00008068
AMCG00008073 mRNA upstream 25018 41335578 ~ 41339688 (-) True AMCG00008073
AMCG00008075 mRNA upstream 58128 41368688 ~ 41378417 (-) True AMCG00008075
AMCG00008076 mRNA upstream 100375 41410935 ~ 41411821 (-) False AMCG00008076
AMCG00008078 mRNA upstream 282094 41592654 ~ 41593613 (-) True AMCG00008078
AMCG00008079 mRNA upstream 283242 41593802 ~ 41758872 (-) True AMCG00008079
TU35381 other downstream 108184 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 292761 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 1805417 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 2218254 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 2254330 39054153 ~ 39055679 (-) True G27720
TU35536 other upstream 536373 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 1450444 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 3107314 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 4740135 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 5170386 46480946 ~ 46481898 (-) True G29361

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000021_04102462_04141661.mRNA True 3269 mRNA 0.50 6 CI01000021 4100664 ~ 4142025 (-)