RNA id: AMCG00008078


Basic Information

Item Value
RNA id AMCG00008078
length 960
RNA type mRNA
GC content 0.53
exon number 1
gene id AMCG00008078
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41592654 ~ 41593613 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACTTAGACTATAGCACCAACCGGACAGATTTAAACTGCACTGTACCTGGACCGGTCTTTTACCCCGATTTCTATGTGGTCCTGCCGGTGATTTACTCTGTGATCTGCGCGGTGGGGCTCACAGGTAACACCGCAGTCATCTATGTCATCCTCAAAGCCCCCAAAATGAAGACGGTGACGAACATGTTCATTCTCAACCTGGCGATCGCCGACGATCTCTTCACCCTTGTCCTGCCCATCAACATCGCCGAGCACCTTCTGCATTACTGGCCTTTCGGGGAGGTCCTGTGCAAAATCATCCTGTCCATTGACCACTACAATATCTTTTCCAGCATCTACTTCCTCACGGTGATGAGCATCGACCGCTACCTGGTAGTCCTGGCCACGGTGAGGTCCAAGAGGATGCCCCACCGCACCTACAGGGCGGCCAAAATAGTCAGCCTGTGCGTCTGGGTGCTGGTCATCCTCATTGTCATGCCTTTCACCTTGTTTGCGGGAGTTTACACTGATGACATGGAGAGGAAAAGTTGTGCCTTGAGCTTCCCCAGCCCAGAGAGCCTTTGGTTCAAAGCCAGCCGGATTTACACCCTCCTCCTGGGCTTTGCCATCCCAGTATCGACCATTTGTATCCTCTACACCATGATGCTGTACAAACTGAGAAACATGCGCCTGAACTCCAACGCGAAAGCCCTGGACAAAGCCAAGAAGAAAGTGACTATCATGGTCTTCATCGTCTTGGCCGTGTGCTTGTTCTGCTGGACGCCTTTCCACCTGAGCACCATCGTCGCCCTCACCACCGACCTGAGGACCACTCCTCTGGTGATTGGCATCTCGTATTTCATCACCAGCCTGAGCTACGCCAACTCTTGTCTCAATCCGTTCCTGTACGCGTTTCTGGATGACAGTTTCCGAAAAGCTTTCAAGAAGATGCTGGAGTGCCGACCTGCGGGAATGTAA

Function

GO: NA

KEGG:

id description
K08377 NPBWR2; neuropeptides B/W receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35443 lncRNA downstream 180430 41405791 ~ 41412224 (-) True AMCG00008076
TU35435 lncRNA downstream 226038 41364762 ~ 41366616 (-) True G28309
TU35434 lncRNA downstream 232186 41360144 ~ 41360468 (-) True G28308
TU35353 lncRNA downstream 463026 41129138 ~ 41129628 (-) True G28241
TU35311 lncRNA downstream 548607 41043696 ~ 41044047 (-) True G28206
TU35456 lncRNA upstream 33748 41627361 ~ 41627752 (-) True G28325
TU35516 lncRNA upstream 214165 41807778 ~ 41812074 (-) True G28361
TU35523 lncRNA upstream 232829 41826442 ~ 41826766 (-) True G28366
TU35534 lncRNA upstream 249189 41842802 ~ 41843152 (-) True G28377
TU35535 lncRNA upstream 251343 41844956 ~ 41845987 (-) True G28378
AMCG00008076 mRNA downstream 180833 41410935 ~ 41411821 (-) False AMCG00008076
AMCG00008075 mRNA downstream 214237 41368688 ~ 41378417 (-) True AMCG00008075
AMCG00008073 mRNA downstream 252966 41335578 ~ 41339688 (-) True AMCG00008073
AMCG00008074 mRNA downstream 282094 41310009 ~ 41310560 (-) True AMCG00008074
AMCG00008071 mRNA downstream 344492 41240156 ~ 41248162 (-) True AMCG00008071
AMCG00008079 mRNA upstream 189 41593802 ~ 41758872 (-) True AMCG00008079
AMCG00008085 mRNA upstream 253595 41847208 ~ 41849954 (-) False AMCG00008085
AMCG00008086 mRNA upstream 257595 41851208 ~ 41870711 (-) True AMCG00008086
AMCG00008089 mRNA upstream 332232 41925845 ~ 41943588 (-) True AMCG00008089
AMCG00008091 mRNA upstream 384074 41977687 ~ 41997684 (-) True AMCG00008091
TU35381 other downstream 390829 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 575406 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 2088062 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 2500899 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 2536975 39054153 ~ 39055679 (-) True G27720
TU35536 other upstream 253320 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 1167391 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 2824261 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 4457082 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 4887333 46480946 ~ 46481898 (-) True G29361

Expression Profile