RNA id: AMCG00008080


Basic Information

Item Value
RNA id AMCG00008080
length 5926
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00008080
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41800249 ~ 41812742 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaaactcacaaacacagagaaaaccAAACAGACGACGAGACTGCAGCTGAAACCAAGAAATCATCTCCCCAACCGCGCCGAAGCCGACCTCGGTGACAGCGGCCGAGCATTTGCAGAGCTCCGCCGTGGGGAGAGACTTCTTTGTTCGCGGCTGCTGtcgtgcactttttttttttttttttggtattgttgTCCAGTGCAGCTGTTCCCGCTGTCGCACACCAGACCCAGTGCCGTGCCTGCATCCTGATAGGCCGAGCTCAACGAGTTGAAGATGGGCGGAGCAGTGAGCGCCGGGGAGGACAACGACGAGTTAATCGACAACCTGAAGGAGGCCCATTACATCCGCTCTGAGCTGGTGGAGCAGGCCTTCAGGGCCATCGACCGCGCTGACTATTACCTGGAGGAGTTCAGGGACAATGCCTATAAGGACCTGGCATGGAGGCACGGGAATATCCACCTCTCCGCTCCGTGCATCTACTCCGAGGTCATGGAAGCCTTGGACCTGCAACCGGGCCTGTCCTTCCTCAATCTGGGCAGCGGGACGGGATACCTCAGCACCATGGTTGGCCTGATACTAGGCCCATTTGGAGTAAATCACGGGGTGGAGCTACATGCAGACGTGATTGAGTATGCCTATCAGAAGCTGGATTTTTTCATCAAAACTAGTGACAGCTTTGATAaGTTTGAGTTCTGCGAGCCGTCGTTCGTGGTGGGGAATTGCCTCGAAATCACTCCCGAGACCCGCCAGTATGACCGGGTGTACTGCGGGGCAGGAGTGCAGAAGGAGCATGAGGACTACATGAGGAATCTGCTGAAGGTCGGAGGAATTCTGGTCTTGCCATTGGAGGAGAAGCTAACCAAGATCACCCGCACCGGATACAACACATGGGAAACTAAGAAGATCATTGCGGTCTCCTTTGCCCCACTTGTACAGCCTAAGAACCGAGATAACGGAAAATCCAAAGTAGTCCCGCTCCCTATGTTCGAAGTGCGGACGCTGCAGGACCTGGCGCGCATTTCCATCCGCCACACCCTGAAGAAGATCATCAACCAAGACAAGGCGAAGAGTGGCGGCGCGGCCAAGAGCGGCCCCCGCTTCAAACGCAGGCGAGTGCACCGGCGCCGCGTGGACTCCGTCCTCTTGACCAACAAGCACGTCTTCGTGAGCCGCATGATCCCCAACCCCATGgacgacaacaacaactgcGACGAGATAGAGGAGGAGCGGGCcgaggaggacgaggacgaggaggagagggagcaggGCGACCTGAAGCCCGAGCCGCCCATCAACTTGCTGAGGGAGAAAATCTTGAGCCTCCCTTTGCCCGAACCCCTTAAAATGTACTTGCTGTATTACAGGGAAAAATAGAAGAGGTTGTGTTGAAGTGGTCGCCGCCTATCAATCTAGTCTAGCTaagcagaaatacaaaatcttcCCCTGTAGGCAATCCAGGGCCCAGCTAACTGTTGTCTGTCCTTTATTTTTCCAGGGGCCTATTTTTATAAAGAGCAGGAGAATTTGCTGACCGTAAAGGGGTTATTTTCTTTGGTAGACCAAAATCCTTTCCCTACACTTTCATGTTCCCAGTGTAGTTATTCTCAGAGGCCTGCATTTATGTTGTCAGTTCTGTTGTTTGGTCTCCCAAGCATTTCCTCCTCTAAGCGGCCTGTCGAAGGTGAAGGAAGCAGCCGGGTCTTCGAAGTGTAAGGGAGAGGCACAGAAGCTTCATTGTCATTTTGAAGTCGAACgaaatcaaagaaagaaagcaacGACTCCTGTGCGTGGGACCTGCTGTATTGCTCGGTATCCTGGGATATTGTAatgccatttcatttcatttgtgtttccAAACTATAAACTGTGTCTACATAGGGAGGTCTCTTGATCACCAGCACCAAGTATTTTAAAGAGGACCTTTCTTTGTAGAATTGATAGTCTGTCTGTTAATGATGTATTACTGGTCATTagtttgctaaaaaaaaataataataatggcattaATAAGGGAACAAAAGAGCAaacgttttctttttctttttttcattcctcAAATTCGTTTTTAAAAACCATTAGGGTGGAGTGCTGCTTTACACAGTAGAtcacagacaaaagaaaaagcccCCTGAGGTTGatctttaaaatagtttaaattgtTCTTACTTTCTTGATATTTCTAAGCAGTGTCCAAAAGAAGAATGCTTTGAAAAGATGTCAAAAACCCAGCGACTCTCTGTGGTTTTCCTGTTGTGAAAGCAGAGGGTAAGGTGTCAACATAAggtcatatatatttaaacagctgtgtattcaaatattaaatatgaagtaCTGTACTTAATCACTGTACAATTTGTAGCAATATAGTCCTTTCGTGGCTAAAATAGCACATTACAGACTGGGTACGTGCAGTCCTGGTAACCAGATAGTCACAAGTTGCTATTAATCCCCAAAGGTAAGTGTCCCCACGAGGGAAGTAGGGGTCGAACCCTTATTTTGATGCATGCTGATGTATGTGACCTTGTAACAACAGTCATcgctgagcaaactgctcctgAGACAAGTCTCCTCAGCTTCAGAATCTGGTTCACAGCTGTAGCTTCTCGACGAGTGTCTGACGAGACAGTGAGGACATGTCCTGTGTCCAACCTCATCTTGTTTAGTTAGTTTGCAGTGATGGGCGATGTAACCTAGCGCTGCCCGCTTGGTAGAGAAACAAGAAAACCTTGTTTCCAAGTGAAGCATTAGTATGCTGCCAGGGTCATTCACATTTTATCTGCTCTCCCAGTAAGCGTTTTTCTAcgctttttttaattaagagaaaGGTTTGGAGTTTGTGATGCATGGGTAGAGAAGAGAAGGTTACCGGGCGTAAGGGGAAGCACTGCTTCCCGAAATGTAGTTCCTTACCTAGAAACGACTTGATATtcagtatatttttttgtggaTAAATGGAGTGCTCCAGAGTCTCACGCCATCTTCACAATTTAAAGTGCCTCTTCAGTGTCTCAAAGAATTGCAAGTATTGGCCTTCTTTCTGAAAAGGGGGAGTACGTTGCATAACCTTTCTGTGATTAATGTCATTAAAGTCCCGTAAATGGTTTCAGAGCTTACAAtcgcttaaaaaaacaaaaacaaaatgtttaatggtCACCTTCAAGGGTGCCACGTGGTAAGTCGAAAGGTGATCTCACGGAAGAAAGAGAGGTTTATTCTGTGAGCTTTAAAAAATGAGGTTTTATTGATACGGATTGAAGGACTCGTAAATAATTCAGCTGTGTGTGGTAATGATGTTATGGAGATGTTCCTATGAAGTAGTTCTCTTTCTATATAGCCAGAGTTTTATCTATTGGAATTGCTCTATGTATTTATCagtaataaatattgaaaaaagaaaagcaaaaaaaaaaaaaaagtatttaatatttgtgttgaaGGATATGCTTATGACTATACAGTGTGGTGTTATTTATATCTTTTTCTCTCTATATACCTTACAAAGATCGTACGGATGtgtacatttacaatacaaCAGAGAGGAGAAAAATTCTCACCCCCACAGGATACGTTACCAGCACTTTGAGTCTACAATATACCatataactttatatatatatatatatatatatatatatatatatatgtatgtgatcTCTATATTCTTTAACCTTCTGTAACTGCTTAGCATATCGGTTTGATAGATCGCTCTATGCTGGGAGCGTAAAGCAAGTGGTATCTGTCTTGTGAAATGTGTAAGTGACATTTGCTGTATCCTAATAGGTGATGTGTTTCAGAGAAGTCGTTGCCGTCTGGAGCTATCATTATTAGCCCACGGAGGTGAAGAGGTCGCAGATCTTGCGCTCGGGGGTCGCAGGTTCGAGTCCCGGTTACATCCTGTTAGTGGAGTCCAAAAAGAGGAGTGCGTTTCAGATCAGCAAAGGTAAAGATgggattgattttgttttctaaacagACTGGCTAAGTAAGTGAAGACCTGCTGAGCCTAAATTAAGTCTCCTATCTTGTAGGACTATTGCAACATTTCTTTCCTCCTAGTCGGATCGTAAGACAGAAAGAGCAGCAGGGCAGACTGATTCTCTGTGATAGTAGGTCACCCTTCTGTGGACATCTTCAAGGCAAGCttcagtttaatatttcagATTAGTTGAGGGACTTTGCACAAATTCCACGTTTGTTCAGTTCCTTGTATTTATTAGTCCTTGTATCTCCAGTACATGTGCCTACGGTCTTTCAAGGATTCATGtggtttaaaaatcaatacataaatctGCTGTGGGTAATTTTGAACGCACAAAGACGAGGAGGCCTGGACGCACTGTACTGTGTAAATTCTGGTCTCAGACTGGGCTCATCAGACGAGAAGTAAGTTTGTGAATGTATTGGAGCTCTTCAGATGTACTACCTGGAATCAGAAATGCATCATTACAGCCTGAAAACTGGAGGCTGTTGATTGGGAACcacttttaacacattttctggGTATTTCAATAACCATttgcagtgatttttttttgtgtgctgatCTATGGAAggtaacattttgaaaaccacATTTCTTTTGCAGAGCAGTTTATAATCAAATACTTTGGAGGCAGGTTAGGGTAACCAGTTTCCCTGGTCATAGAACAGCATTTCCAGTATCATTGTAGTAGTTCTGAGGAATGCATATTTTATCAAAAGGCATCACGAAGCATACATAGTAAGAATTAATGATACTGATCCAGACTTCTGTGTGTTTCATTTGCAGAAAGCTTGCCtattgacatttttgttttcataaccCATAATGGTGATTCAAAGGTTTGTGCATTtaccatgtttttgttgttgttctttctttctaattttAGGTGAataattccatatatatatttgcatacatataaattaaatgtgatcTCTGATACTTGGAGGGTAGTTTAGCTGGGTAATTCTCCTTCCATTTTTGCTGTGATTCAATTTCGATGATGTGCCCTCAGAGACTCTGTAAAGCTGTATTCTCAGTGCCAAATGTACATTGCTTGAACCCTGCACTGCTTAAGGGATATTTCATGTAGAGCTTTCCTCTGATTGTAATGTATGTTTAAGGGTTTTCTaaggtttacatttttgcaATGTTAATGTTGTACTTTTTTGCACAGAAATCATGTAAGCAGGATGTTCTGATCTGAGGAAAAACATCATTGTTTTCAGTCTTGGCTGCAGTTAATAAAAATGACACCTAAATGTGCAATCAAACCCtcagctttccttttttccccgtTTGAATGTAACATTTCACAGAACTTAAACAAATCAGGAGTTTTCACCATATTCTGCATGATTTTCAAATACAGTCAAGAAGTTTCTCTGTGCATTCATATAATGCCAGATCACCAGCAACTAGAAATTAATTCCTGATGGGACTTGTGCAAAGAAGAAGATACATCTATTTAAGTAGAGTCCTTACTGCAGAAGCTTAAAGTATATTCAAAAGTCACTTGAAGGTATAATCTGCCCAGTCACCAAAATTGTGCCATTTCTACCCCAGCTTCTGTATTAGAGTTTGAAGCTAATGACTTTTAGCATTACCCCTTAGCTGATATCATGCATTGAGACAACTGTCACACAGAACCGATACCTGTCTGAGCATTGCACAGTCCCATATTTGCTCACTGAggtctgttttttcattttgcatggCTGCACAGTATTTATGGTTGGCCTACTTACAACTGTCAACAGCATTTGAACTCATCAAGATAGGCTACCCATGCACAGATCAAGACAATAGCCCTGATTCATTATGTTCTGTGAAAGGAACAACTagtagaagaaaagaaaaaaaatcttgtaaATCACACTGCGACTGTTTTCATAAATAGGAAGTGtggtgaaataataaaaatacattaaacaag

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35460 lncRNA upstream 71816 41728212 ~ 41728433 (+) True G28329
TU35458 lncRNA upstream 104541 41695354 ~ 41695708 (+) True G28327
TU35429 lncRNA upstream 411465 41388583 ~ 41388784 (+) True G28303
TU35427 lncRNA upstream 421956 41378051 ~ 41378293 (+) True G28301
TU35426 lncRNA upstream 428428 41370866 ~ 41371821 (+) True G28300
TU35467 lncRNA downstream 34250 41846992 ~ 41849950 (+) False G28332
TU35472 lncRNA downstream 34250 41846992 ~ 41865026 (+) False G28332
TU35471 lncRNA downstream 113103 41925845 ~ 41936214 (+) True G28332
TU35554 lncRNA downstream 164517 41977259 ~ 41980084 (+) True G28394
TU35585 lncRNA downstream 294125 42106867 ~ 42110075 (+) True G28416
AMCG00008081 mRNA upstream 10571 41769950 ~ 41789678 (+) True AMCG00008081
AMCG00008077 mRNA upstream 237060 41558420 ~ 41563189 (+) True AMCG00008077
AMCG00008070 mRNA upstream 443416 41350428 ~ 41356833 (+) True AMCG00008070
AMCG00008065 mRNA upstream 671375 41123903 ~ 41128874 (+) True AMCG00008065
AMCG00008064 mRNA upstream 681289 41111056 ~ 41118960 (+) True AMCG00008064
AMCG00008083 mRNA downstream 8926 41821668 ~ 41821994 (+) True AMCG00008083
AMCG00008084 mRNA downstream 13998 41826740 ~ 41832892 (+) True AMCG00008084
AMCG00008082 mRNA downstream 20520 41833262 ~ 41846010 (+) True AMCG00008082
AMCG00008090 mRNA downstream 80147 41892889 ~ 41893875 (+) True AMCG00008090
AMCG00008088 mRNA downstream 95801 41908543 ~ 41915531 (+) True AMCG00008088
TU35066 other upstream 1553011 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 1740863 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 1965313 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 2295872 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 3091334 38692739 ~ 38708915 (+) True AMCG00007970
TU35555 other downstream 180117 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 1292971 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 1334031 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 1479854 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 3210406 45023148 ~ 45036416 (+) True AMCG00008177

Expression Profile