RNA id: AMCG00008082


Basic Information

Item Value
RNA id AMCG00008082
length 4115
RNA type mRNA
GC content 0.44
exon number 13
gene id AMCG00008082
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41833262 ~ 41846010 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAAGCACTGAATGTGACAGCCCGGCGGTGCCCTGCGCGTCCTGCTCTCCAGCACCTTAGAGCCGGGCGAAGTGGCACAACCAACCTATGAGTCCCGGCACGGGCAACTGCAGATCTATGGGTGAGACTTTCCGAAATAAATGCCCGTGGCTGTGTGGCCTGTGCACCCGGCTGTGTGGACATGAACAGACCGCCGGAGATGGTGCCGGAGACGTGGACCGAGAGATTAAGACCGCCAAGGCGCCCTTGACGCCGGAGGTAGGGCGCTATAACGCCCCGGTGCCGCCGGTGCCCCACAGTGAACCCATTTACACCGCGCTGTGGCCATTCCAGGCAAGAGCCTCCGAGGAACTGTCCTTTCAACCCGGGGAGCTTTTCACCATCCTGGACCACACGGGGGAATGGTGGACAGCGGCCAAGATTGATCCCAATGGCAGAGTTGTGGCTGAAGGATATGTGCCACGCAATTACCTGGCCAGGGGAGACACCTTGGAGGCGCAGCCgTGGTTTGTTGGGAAGATGAATCGTTTGGAAGCTGTAAACCAGGTCCTTTCAACCGAAACTGGAGATGGCACGTTCCTGGTGCGAGTCAGCGAAAGACAGAATATTGATTATGTGTTATCAGttaaatttgaaaacaaagtgaGACATTTCCAAGTACTGCAAAATGAAGACATGTTCTATTTAAACGACAAAAAGAGCTTTCCAACCCTGATGGACCTCATAGACTTCTACAGAATGCATTCCCTCCCTCATGTGGGGAAGCTAACTCATGGATGCTCAAAACAAGAACCTAAACCCAAGGACTTATCGCACTCAACTGTGGATGAGTGGGAACTGCCAAAGGAGGAGTTCACATTGTGTGAATTACTGGGGACTGGATATTTTGCAGATGTCTACCAGGGAATGTGGAAAAACCAAGTTAAAGTCGCTATAAAGgtcttaaaatgtaatgAGAGCATGGACTTCAAAGAGTTCCAGATGGAGACGCAGATCCTGAAGGGACTTCGCCACAAACACCTGATCTCCCTCTTGGCCATCTGCACGTCAGAGGAGCCCTTCTACATTGTCACAGAGCTGATGGAAAAGGGGAACTTACTTAACTTTCTAAGAGGTGACGAAGGGAAACAGCTGGACGTGGTGTCCCTTTTAGACATGGCCTCCCAGGTGGCTGATGGGATGTCCTATCTGGAATCCCAGAACAAGATTCACAGAGACCTGGCCGCCCGCAATGTCCTGGTCGGGGACAACCTCATCTGCAAGGTGGCCGATTTTGGATTGGCTCGAATCATAAAGGAGCCTTTTTACTTGTCCAATGACAAGAAAATCCCCTATAAATGGTGTGCTCCTGAGGCCATCAGCCACGGCTGCTTCTCTACCAAGTCAGACGTCTGGTCTTTCGGCATTCTTCTGTATGAGATCCTCACCTATGGAGGCGTGCCGTATCCAGggTACCACAACAGTGAGATGTACGCCCTCGTAAGCGGGGAATACCGGTTGCCACGTCCGGAAAGATGCCCGCAATCTGCTTACAGGATCATGTTGGCCTGCTGGGATAAAATACCAGACAAACGTCCAGCTTTTAGGAGCCTCATGCAAAAGTTAGAGAACATCAATAAATACGAAATTAACTAGAGGTCAAACTCCTAGACTGTACACTTCCACAACCCTGGAGCCGCTGGAGAAAGAGATCTGAGATTTAAtggagaaaccagccaatcacggACTGCAGGAACTGGAGGAGGGCTATTGATCAAATCATAGTTCATTCCCCTGAAACTGTTCCTAAATGACCCGAAGGAGTCGCACCAGACAGCACAGCGTGGCCCGGAGTCATATCCTCCGAGTTAAAAACCCCGATCTTCAGCGCTCCTGGCTATATCCAtgtgttttaagttttttctGGATTAACACTATTCCATCTATAATTGTGGAAGGACAACAATCAAAATACTGTCTTATAATTGCTTAAAACCCCCAGATCTCAATCTTGTCATATATATTaaaccttttttatataaacagtgattttgttaattttgtaagTAAGATTATCTATGTTTTACATTGAAAGcctttgaaataaaaagcatCTTTCACACTTGAAACTGGCATTGCATTGCACTACCAATTTTAGGTAAtgtgatataaaatgtatataaataatatcacAGATTATGAAAGTTATGATAGTGTTTATCCCAGCCACGTATATAATGAAGTGCAATAATGTAACTAGTTTTTGTTGGATATGGGGATATCactatgctttaaaataaacaatgatatattgtaagaaaaaacaaagaccgtttaaacattttctatagAACTCAACAAGCTATATATAGAGAATTATTAATGCATACAAACTATTTctgaatgttatattttttaaactctgcAATTATGTAACAACTTTGTAAGACATTGCATTTGTAGCTTTTGTTTCCATGTTCCCTGGATATTTTAAAGCCCACTGCTGACTAAAGGCAGTATTACCATACAAACTCGACTATTGAAACTGCTCTCATCCTTCACCACCAGAGGGACAGCTAAATGCACTATTAGTATTCATTTGAGGAATGTATCATTCAATGTTctgtcaacaacaacacaatgtgGATGTACGAGTTTAACAAGAAGAGCTCCTGAAATGAACTTACAGAGAGATTGACCGCTAGAGGGCGCTGCTTCACATGTTTTACATTGAAATCGGCGTGTGGCCCAGGACATACATACAGcTCAGACTCTTAAACAGAACTGCTATTGAAGCCCTCAGTTGAGGAGGGGTGTACGGCCTATTCTACTTTTCAGATCTGCTGTGCCTGaactgaaggaaaacaaatgaaagcaaaagcaacattgaaaggaaaatcaaaGCATCTGAAGAGTTGGACCTGATTTTCAGTGCCATGGCCACAGTCCCGTCTCCAGGATGCCTACTGGCAAGGAATCAGTTTTACAGAAGCCGAATCAACGCATCAGTCAGTCATTCCTCTGGTTGCTCTTTGCAGTCAAAGGGAGTGGAAGCCCAGAGTCTCTCCGTTCACCCAGGACTGTCTCCCGTGATGGACTGGTGCACGAGTGTGCTGTTAGGACACACCAGAGCGCACGCCGTCGCACACCAACCACCCAGCCCAGCAGAAGGTGTAACAAAGTAGGTGTAACTAACTAGCAACTACAGAAATCTACCTGGGGGAAGCCGCAGAGAAAGATTGTCTGCTCAGTTACTGTAAAGTGAGGTGTCTCAGCACTTCAgcagcaaaacaaagacatttattttcttttttgcctaGCAGGAGTGTACATCTCAAGAGAGACAGAGTTGTTCAAGGATagatgtttttgtctttcagaAAGGGGCAGCAGTCCAATCTCCCAACTGTTtacacaggttttttttttaaaaaaggccCATATCTGTGCACAGGCAGAATGTGGCAGATTGATTTCCTTTCAGAGCACGGCTGTTTGCATTAGATGTCCAATCACAAAGCTACAGGTCGCAGAGGATTTATGCTCCACAGATGTGTGTTGGAACAGAAGTGTCCAGTCAGCACAAAGCAGCCGTGCATGTCATGAAATGGAAACTTGGCACAATAGCTTGGCTGATTTGACATTTAGACGTGCCCCATTTAAGCTTGTTAGtggcacaaaacaaacattttaatttggaaacttgccacttttgtttggtttaaagaAAGTTGTAGCTGCAGCTCACaccaacaaattaaatgttacacaaaCAGCAAATGCAATGGTCTGACTAGTGTTGTTCACGGTGACTGGAAAATCTTTTCATAATGTTGTCCTTTTTGATCCTAAAACTAAGTGACGTGGTCTCCTTCACAAATGTGCAAATAGTCCTTGAATGAAACCCCATTGTTACTCGTGTTAATAGTTGTAAATATTCATCTGCTTACTGATTTATGTTGTGAAGTTACTGATGTAACCATGTGCAAGTCTAAGTGTAATTGCATCATGAAATGTTGTTCTAGTTTATAGATCTTTCAGAGCCTTTTGGTTTCAGTTGTTACCTGCTGTAGTTTAATCTGAAGTCCTGTACCAAACCAAATTGTTATCCAAAATAAAGGTTTATCTGGTTTGTA

Function

GO: NA

KEGG:

id description
K08894 PTK6, BRK; protein tyrosine kinase 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35460 lncRNA upstream 104829 41728212 ~ 41728433 (+) True G28329
TU35458 lncRNA upstream 137554 41695354 ~ 41695708 (+) True G28327
TU35429 lncRNA upstream 444478 41388583 ~ 41388784 (+) True G28303
TU35427 lncRNA upstream 454969 41378051 ~ 41378293 (+) True G28301
TU35426 lncRNA upstream 461441 41370866 ~ 41371821 (+) True G28300
TU35467 lncRNA downstream 982 41846992 ~ 41849950 (+) False G28332
TU35472 lncRNA downstream 982 41846992 ~ 41865026 (+) False G28332
TU35471 lncRNA downstream 79835 41925845 ~ 41936214 (+) True G28332
TU35554 lncRNA downstream 131249 41977259 ~ 41980084 (+) True G28394
TU35585 lncRNA downstream 260857 42106867 ~ 42110075 (+) True G28416
AMCG00008084 mRNA upstream 370 41826740 ~ 41832892 (+) True AMCG00008084
AMCG00008083 mRNA upstream 11268 41821668 ~ 41821994 (+) True AMCG00008083
AMCG00008080 mRNA upstream 20520 41800249 ~ 41812742 (+) True AMCG00008080
AMCG00008081 mRNA upstream 43584 41769950 ~ 41789678 (+) True AMCG00008081
AMCG00008077 mRNA upstream 270073 41558420 ~ 41563189 (+) True AMCG00008077
AMCG00008090 mRNA downstream 46879 41892889 ~ 41893875 (+) True AMCG00008090
AMCG00008088 mRNA downstream 62533 41908543 ~ 41915531 (+) True AMCG00008088
AMCG00008087 mRNA downstream 70696 41916706 ~ 41921311 (+) True AMCG00008087
AMCG00008093 mRNA downstream 198794 42044804 ~ 42055393 (+) True AMCG00008093
AMCG00008094 mRNA downstream 225739 42071749 ~ 42072173 (+) True AMCG00008094
TU35066 other upstream 1586024 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 1773876 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 1998326 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 2328885 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 3124347 38692739 ~ 38708915 (+) True AMCG00007970
TU35555 other downstream 146849 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 1259703 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 1300763 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 1446586 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 3177138 45023148 ~ 45036416 (+) True AMCG00008177

Expression Profile