RNA id: AMCG00008086


Basic Information

Item Value
RNA id AMCG00008086
length 1947
RNA type mRNA
GC content 0.40
exon number 6
gene id AMCG00008086
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41851208 ~ 41870711 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCAAAAACACAGCAGATATCAACCTCAACTCTCCTAACAAAGGCCTGGTGTCCGACACCATGACAGATGTGCCAGTAGAAGGTGCCACGAGTTCCGCCAACACCATGTTGCCCACTGGTATGACTGAAGAGGAGTCGGAGGAACTGAGGATTGAGCTGTCAAAGGTGGAAGAAGAGATTCATACTCTGCGCCAGGTCCTATCTGCCAAAGAGAGACACGCCAACGAGCTGAAAAGAAAACTGGGACTGAGCCCGTTGAATGAGCTGAAACAAAACCTAACCAAAGGCTGGCAAGATGTGCAGACCTCTAATGCATATAAGAAAACTCAGGAGACCCTTTCACAGGCAGGTCAGAAAACATCTGCAGCTCTCTCCACTGTGGGCACGGCTATCAGCAGAAGGATTGGCGATATGAGGAACTCTGCAACATTCAAATCATTTGAAGACAAAGTTGGAAACATCAAGtTCAAAGTTGTGGGCGGCAACGGAAACGGGGAAGGTGTTCGCTCTCCAACCGAACCCATTCCAGTTCAGGACAAGGCTCCTTTGTAAAGCACCTCTCACAGAACTGTCTTCACTTGATCACTGATGCCCTTATGTAACATCTTCTCCGCTGCAGTAGCCCCCCCAGTACTAAAGCATGTGCATATATATCCGTTAATCTGATGGCACAAATACCAGCGTGCGATCAGATTGCcacaaattgtaaaaatgtaaaccattttgtattataaaccGTTTTACACTGCATTGCATAATGTTTTTACATAACTTTTATCAATATACTGCCTACTGACGTGTGTAGGTGGGGGCTTTAGAGAGAATTTAATAAGTTTATCTCATTTTTGTACCTAAAAGAACTCTCACGCTGAACATTAATGTCAGTCCCTTTTTTACACTTAGTACAATGTAAAGCAGCGCTTTGAGGTGTAAGAGGTGAATGTGGAATCTAATGCCTAATATCAGCCTTATATCACTTTATACTTTACCAGTTTCATTTGAAGAAAGCTGATCACTTCAGAAGGCGTGCTGTTGAAATGTCTAGATTTAAGCATTGTGCACAGGAAGCGAAACCGCTTATGTAACAAAAGATTCGAATGCATGCTTTTTGCCATATGATAAGTAccattgcttttaaaagacTGATAGTAATACATCTCTCCCACTGTATCAGTGCCACACTGTGTTTTCTGCCTTAAAGTTGCATTGCTAAAGTGTGCACATGGCCAacttaacaataaataaatacacaaatggaaactaaTTCATAAGATTCACATAAGGGCTGGACATGCAGTTTGTTTAGTAGCACAGTCACttttggggaagaaaaaatgtaGAAGTTAGTTGGTCAGGCGTAAATTAGTTTCATTTTGTTAGAATGTTTAGCTTTTCCTTTCCGAATATTTCCTTTTCAACCtgtccatgttttgtttgtgggttACAACAGCTAGGAGATCTGAATTGCAATGGATTAGGACTTGTGTAGGTCATGTTGCCATATTTTTCTCTGCTGCCAGTGTCTGTTCATTTTTGAAGTTTGCTCACTTTTCTCCATAGAGGAAAactaacttaaaataaaaaactatgcCAATGAAACAGGTAGACTTCTTGCTAGGATGTTTAGAGCTGCAATACTAAAAATGGCAAATACACTACGGGATGCTATGggtgaaaatatttaaacttatacagataaaatatatagcCATTGTAGGCAAAATAGTTTTATTAGGTTGTGTGCatattattagaaaataaaggGATCAGTTTGTATGGTTTGAAAACACTACCATGGCGGTTGaattatcattttgtttggACATGTCTGTTTTGAAGATCAATAAAGCATTCCTTTAAACAATTGTGTTTCGCATTGCTGGGCTTTAACAGAACCAAAGGACATCCCACAGTGTAGGAACATTAACACCCAATCAGTGTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35535 lncRNA downstream 5221 41844956 ~ 41845987 (-) True G28378
TU35534 lncRNA downstream 8056 41842802 ~ 41843152 (-) True G28377
TU35523 lncRNA downstream 24442 41826442 ~ 41826766 (-) True G28366
TU35516 lncRNA downstream 39134 41807778 ~ 41812074 (-) True G28361
TU35456 lncRNA downstream 223456 41627361 ~ 41627752 (-) True G28325
TU35570 lncRNA upstream 212763 42083474 ~ 42084457 (-) False AMCG00008095
TU35575 lncRNA upstream 220746 42091457 ~ 42092198 (-) True G28410
TU35621 lncRNA upstream 413248 42283959 ~ 42290245 (-) True G28446
TU35634 lncRNA upstream 430566 42301277 ~ 42302097 (-) True G28456
TU35673 lncRNA upstream 490197 42360908 ~ 42401074 (-) False AMCG00008104
AMCG00008085 mRNA downstream 1254 41847208 ~ 41849954 (-) False AMCG00008085
AMCG00008079 mRNA downstream 92336 41593802 ~ 41758872 (-) True AMCG00008079
AMCG00008078 mRNA downstream 257595 41592654 ~ 41593613 (-) True AMCG00008078
AMCG00008076 mRNA downstream 439387 41410935 ~ 41411821 (-) False AMCG00008076
AMCG00008075 mRNA downstream 472791 41368688 ~ 41378417 (-) True AMCG00008075
AMCG00008089 mRNA upstream 55134 41925845 ~ 41943588 (-) True AMCG00008089
AMCG00008091 mRNA upstream 106976 41977687 ~ 41997684 (-) True AMCG00008091
AMCG00008095 mRNA upstream 213545 42084256 ~ 42089493 (-) True AMCG00008095
AMCG00008096 mRNA upstream 378935 42249646 ~ 42267791 (-) True AMCG00008096
AMCG00008101 mRNA upstream 424731 42295442 ~ 42299333 (-) True AMCG00008101
TU35536 other downstream 1318 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 649383 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 833960 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 2346616 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 2759453 39088922 ~ 39091755 (-) False AMCG00007993
TU35782 other upstream 890293 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 2547163 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 4179984 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 4610235 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 5843223 47713934 ~ 47918462 (-) True AMCG00008245

Expression Profile