RNA id: AMCG00008088



Basic Information


Item Value
RNA id AMCG00008088
length 1101
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00008088
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41908543 ~ 41915531 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAGCCAAACAGCTCAGACAGCCGAGGGGATAGATTGGATTTCTTTGTGAAGCAGGAGGAGAGTTTGGTGGGCGACTCCAGCTACCTGCTCCAGCCGCTGGGCTCTGAGAAAGAGGACTCCTCGAGTCAGGCAACATCCGTGGCGAATCTCCGGGCTGCACTTATGAGCAAAAACAGCTTGCTGTCCCTGCGAGCAGAAATGCTGGGAGAGGACAACCCTCTGCTATTCGACTACTTGCCCAAAGGTGGACATTCGTTGTCTCGGCCTGGCTCCTCCAACTGCTCCTCGAATCGTCCAGGGGGCAAATTTGATAGCAAACAAGGGGCGTCCTCTCCTCCACCCCTGCACCCCTCTGATCGGAGGCCCTCTGGCCCCTCCAATCTTCAGTCTGGGGATCTTATACCAGAAAGACTgatagaggaggaggaggattcTGACTCTTCTCCCATTCAGGTCAAGACTCTCTGTGATGAAGATGTGCAGGCCTTTGAAGCAGGCTTGGATCCCAGCCATCACTCACGGACAGAAGATCAGATGTCCGACGCCGATAGCGGCCGTAATGAAACGGAGCTGTTTCTCGGTGCCGCCCGCTGGCCCCCGGAGCTGCTGTGCTCTCTATGCAAACGCTCCTTCTCCAGCGCCGAGAAGCTCAAGGAGCACGAATACCAGCACACCCTGATGATGGCTCTGTCTCTGGACTGTTTCGAGATTGCCAGGCCCCTGGTCCCCGGACTGGCGGGCTTCCTGGCGCCGGAGCCCCCCGTGCGCTACTTCTGCTCCCAGTGCCCGGCCAGCTTCACCCTCAAGTCCAACGCCGACCGGCACGAGAAGACCATCCACTTCAAGCGCAAGATGATGCAGTGCGGCTACTGCCTCAAGCACTTCCGAGACCGGACCGACCTCAACCGCCACCTGTCCTCCGTGCACTCAAGCGAGCGCATCTTCACCTGCTCCGAGTGCAGCAAGGCCTTCAGCACGCAGAAGAACCTGGCCACCCACATGAAGGTGTGCCTGCAGGGCAGTGGAAAGGCCGAGCTGGTGTGGGACATCGAGGCCCTGAAACACGTGGAGACGGGAGACGCCACCAGCAAGGGCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU35472 lncRNA upstream 43517 41846992 ~ 41865026 (+) False G28332
TU35467 lncRNA upstream 58593 41846992 ~ 41849950 (+) False G28332
TU35460 lncRNA upstream 180110 41728212 ~ 41728433 (+) True G28329
TU35458 lncRNA upstream 212835 41695354 ~ 41695708 (+) True G28327
TU35429 lncRNA upstream 519759 41388583 ~ 41388784 (+) True G28303
TU35471 lncRNA downstream 10314 41925845 ~ 41936214 (+) True G28332
TU35554 lncRNA downstream 61728 41977259 ~ 41980084 (+) True G28394
TU35585 lncRNA downstream 191336 42106867 ~ 42110075 (+) True G28416
TU35590 lncRNA downstream 202390 42117921 ~ 42186382 (+) True G28421
TU35677 lncRNA downstream 517305 42432836 ~ 42437228 (+) False AMCG00008102
AMCG00008090 mRNA upstream 14668 41892889 ~ 41893875 (+) True AMCG00008090
AMCG00008082 mRNA upstream 62533 41833262 ~ 41846010 (+) True AMCG00008082
AMCG00008084 mRNA upstream 75651 41826740 ~ 41832892 (+) True AMCG00008084
AMCG00008083 mRNA upstream 86549 41821668 ~ 41821994 (+) True AMCG00008083
AMCG00008080 mRNA upstream 95801 41800249 ~ 41812742 (+) True AMCG00008080
AMCG00008087 mRNA downstream 1175 41916706 ~ 41921311 (+) True AMCG00008087
AMCG00008093 mRNA downstream 129273 42044804 ~ 42055393 (+) True AMCG00008093
AMCG00008094 mRNA downstream 156218 42071749 ~ 42072173 (+) True AMCG00008094
AMCG00008092 mRNA downstream 176026 42091557 ~ 42100380 (+) True AMCG00008092
AMCG00008097 mRNA downstream 296841 42212372 ~ 42213085 (+) True AMCG00008097
TU35066 other upstream 1661305 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 1849157 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 2073607 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 2404166 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 3199628 38692739 ~ 38708915 (+) True AMCG00007970
TU35555 other downstream 77328 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 1190182 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 1231242 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 1377065 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 3107617 45023148 ~ 45036416 (+) True AMCG00008177

Expression Profile