RNA id: AMCG00008096


Basic Information

Item Value
RNA id AMCG00008096
length 5944
RNA type mRNA
GC content 0.44
exon number 17
gene id AMCG00008096
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42249646 ~ 42267791 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCATATTTCAGGTATCAATTTAATGCCGCAACGGACTAATCCAGTAGGGACCTGAGCTTTGATATTGCGAAGCGACGACGTGAATATCGTCTGTCGGTTTTTCGCTGATGCACAGGCGTCTGCAAGGAATATTCATGATGAGTTATGCGGAAAAGCCAGAGGATATAACGAAAGATGAGTGGATGGACAAACTCAATAATGTGCACATACAGAGAGCCGACATGAATCGGctcattatgaattatttagTAACAGaGGGATTTAAGGAAGCAGCTGAAAAGTTCAGGATGGAGTCGGGAATTGAACCCAGCATAGACCTTGATTCCCTCGACGAGCGAATAAAAATCCGGGAGATGATCCTGAAAGGACAGATTCAAGAAGCGATTGCACTCATTAACAGTTTGCACCCAGAGTTGTTGGACACAAATCGCTATCTCTACTTTCATCTGCAGCAACAGCATCTGATCGAGCTGATCCGCCAGCGGGAGACTGAGGCGGCCCTAGAGTTCGCTCAGACACAGCTAGCGGAGCAGGGGGAGGAGAGCCGGGAGTGCCTCACGGAGATGGAGCGAACCCTGGCCTTGCTCGCTTTTGACAACCCCGAGGAGTCGCCCTTCGGGGACCTGGTGACATCGTAGCTTGAAACTTGTCAGTGCAGGACCGACACAGTGTTACAAGTGTAGGTCATGGCGGTTTTACTGCAGCAAATCATAATTTCACAGGAGACCTTGACATTTCCACTGCATACATTGCTAGCGATGGAGGGGGTCGTCATTTCTCCACATTTAATTCAGAAGCCCTTGCAATCCCTGCCTCACACACGATCAATGATGTCTGTGGCGCTAGATGCGCATTTCGTAACGCCGCGTTTGCAAAAGCAGCGGGGAGCAGGTGATGCGCGTCTCCAGCCCCCacgcctgcctgcctgcctgcctgcctgcctgcccgcCTCTCCAGCCTTAGAAATGCCACGAATCACGCATTATTACGCAGGCCGATATTGctgctttccccccccccaggcACTTCAGTGACAGTGCGCTATTTCTGCGGGAGCAAGAGCTGCAAAAAGACGGCGTTTGTTTGCACCGTCATGATGGGGAAGAGCATCACGCCGAGACGGAGGCTCCCGACGCAAGCCCTGGGTGTGCGCGGCGGCTGCCTGCCTCTCACTTCCTGACTGCGTGGCCCACAACGGACACGTGGATTATAACACTCCccgaaggaaaaaaaaagatcattaGCATTGATCTACCCGCCCATTCACCTGTCCTGAATGTGGGGTTTGTCGGTGGCGTAGCCCTGCTTTGCTAAGGAGATGAGCCTGCGTCCCGGACAAGTTCTTCTGGTTTGCCCCCCGACGCGGCCAGTTGCTCGGATTGTCTGCTGATTTGAGGCAGCTGGCGCGCAGGAGCCGTTGAATGGCAGTTCTACAAAAACATGGCAAGAGCCCGGGTGCAGATTTGGTCAGCCTCAAATCAAATCCCCAGACTGGCTTTGGAGGAAATGGGACTCCAAAAAAGTGGACTGACAACAATCCCTACTGGTCCCGGCCGTTAGCCCGGGTCTGGACGGCCGTGCTTCTGCTGGGGACATGCCTGCTATACTGTGCCAGGGTGGCGATGCCTATCTGTGCCGTCTCCATGGCAGAGCAGTTCAGCTGGAGCAAGAGGGAGTCTGGCATTGTCCTGGGCAGCTTCTTCTGGGGATACTGCTTCACTCAGGTCATTGGCGGGTACATTAGCGACCGGGTTGGGGGGGAGAAGATTATGTTGCTCTCCGCTGCCGCGTGGGGCTCGATGACTGCCTTCACGCCTGTCCTCGCTCACTTCTGCTCCCAGCCCATAGTTTCCATGACGCTGTGCCGCTTTCTCATGGGGCTGCTGCAAGGTGTCCATTACCCCTCTTTGGCCAGTCTCTGCTCTCAGAAAGTGCCCGAGGGGGAGAGAGGCTTTTTAATGAGCACGGTGGGAAGTGGCTCCTACTTAGGGACCTTGGTGATTGGCGGGGCGGGCTCCTTAATGCTAGACCTGTATGGCTGGGAGAGTGTTTTCTACATTTCTGGTCTGTCTGCTGTCCTCTGGGCATACTGCATGTGGAAATACCTCTTAAAAGGAGAGGGTCCTGTCATCTTATTAGAGTCTTTTGGAAATGGAGTATCCCAATGCAAAGTATCCAAGAGGCATTGGTTCCAACTTTTCAGACAGCGTCCAGTATGGGCTGTGATCATCACTCACCTTTGTACCGCAAGCACCTTCTTCACTCTGTTGTCGTGGCTCCCAACCTTCTTCAATGACAGCTTTCCCGATTCGAAGGGCTGGGTGTTCAATGTGATCCCCTGGTTTGTTGCCATTCCATCGTCCTTATTTAGTGGATGTCTTTCTGACCACCTTATAAGTCAAGGGTTTGATACGGCTGCAGTAAGGAAATTAATGCAGttcTTTTCCATGGGAGTGTCCAGTGTGTTTACCCTCCTCTTGTGTCGAACTACAACCTTTCCTACGGCCATCGCCTTTGTCTCGGCCACAATGGGACTCACAACATTCAGCCATAGTGGTGTTTCTGTGAATGTCCAAGATTTGGCGCCCTCTTGTGCTGGATCTTTGTTTGGTGTAATGAATACATGTGGAGCATTTTCAGGGGTGATCATGGTGTATTTCTCTGGATACCTCATTGAAACTACCAACTCGTGGGCTTCGGTCTTTGCCCTCATCTCGGTGGTCAATCTGTTTGGGCTGGCCACGTTCCTGCTGTTTGCCGAGGCCAGGCGAGTGGACATCGAGACCAGCAAGCCCAAATACCACAGCGTACACATCTGAGGAGACCAAGCGCCAGCCGAACTCCTGTGTGCCGTCGCAGGTAAAACGGATGCCTCCAAGGGCCGGGGCTTTGGTCGGCACTCAGAAACCGGCCTCCGCTCCATTCCAGATTGATGCAAGCTTAAATGACTTCCCTTTTTTCAGTCCTGTAAAGGATTATGTTCCTGGGGACATTACAGAAGGATCTCGACAGGCAGGATTCGTAAGGATGATCGCGGTCACTCGTGTTGTCCATAAGGTTTACAGCCTACGCTCACACCTTTCAGTGATTTCAAATGAACGTCTCAGACTTCAGATCTGTCGTACACTAAAGGGCAATGTGAAGAAATCCATTTAACTTTAACTGTAATGTCCTGGTACTGGTAGAACATTTTTCTATGCAAGGAATGGACTGATTGAGCTTAAGAATCCACACATTTTTCTGAAAGGCAACtgtagaaattaaaattaattaaaaataattcaacacGCTCAACAGCTTTAGCTTCTTGTATACCAATATTCCCCAGACATTGGTTAAGGCCCGAACTGAGTTGTGAATTTGCTCTAATAATTCACTGCTCTTTATTTCCGTAGTTTCTAGTTTGCCCATTACAAAGCTGTAGTCCTGGTTACCCTTTAGTTCCAGCCCTTGGTATCGCCTCCTCTTCAGAGGCCATTTCCTGCAATTAAACAGTTTGATTACTGTAAAAGTACCACAGTCAACTGTAACCAGTGCAATTAATCAAAGTAAGTTAAACCAAAGAGATGtaactgttttgtaatgtacattttctaCCTAAAACACCTCAAAGCTGTTTTTCCACTAAGATATCTTCTCTTGGTGTGTCTTGAAATATGAACTTGTTAAATCGGATGTATTCAAATATGTCACTTGAACTGTAAAAGAGACGACCAACTGGTTAGGAAGCTTTACTGCACCGAAACCACATTTCTAACAGTAGTAGTTCTGCCTGATTTTTACTGCTGGCACACGTCGTTCCTCCATGTTGGAGCAGCTGTTCCCTTACCAATTAAGAGAATATTGCATGATGGCGCTCCTAACTTAAGAGTGTAGACAGGGGagtataaaagtaaaaagtctttGAATTGTCTTTTTAGGAAGCAAGAGGGAGCAGCGAAACTCGTACGCTGGCTTAAAAGTGCGCTCGTAGACGTTTGTTTCCGCTTGTCTTAGTCTGATGAGAGGGGTTGTTTGAGGAGGAGTTGTGCACTTCCCCAGTACCTGTTGTTGGGCTGTTCAAGATACACGATCATGTGAGCATTGCTGTGTCCATGAAACAATCGTTTTTGCAGTCGATTTTAAGATCACCGAATAAAACCTGGCGGTGGGGAGGAACCTACTTCcgaaaaaaaaactcttgcaAACGTCTGCAGCTTCTTCCATTCCTCCGTTGGATGTGTTAATCAGCGCATGTGATACATTCTTCCAGTTTCATCCATTTCATTAATAGAATTACTGCAGGCAGACTTTGTTCAGCAACTGAAGAAACCAGAATACACAGCACTTTAAACGAGAGAATACTGTACCAGATCGCAactaccattttttttttttgccccctccccctcacgATGTACTGCCAATTCTGTTTGCATTGACTAGGATTAACGCTGCACTAGAGCACACATCTATGTTCCCACATTTTATCAACCAACATTTGAATGCTCCTGCCTGCATTGTTGAAATGATATCCATATTAAGTCCCTTATGGAAACAAAAGCAGGTGAACCACTGAAGGATAAGTGCCAGTTTATTTGAGCTCCGATCTTAATATTTGCAATGAAATCATTCGGGTTGTCATGTCGGATCGATGGTGAAATATGAATGAGCAGTGAACTCACATGCTGGCCAACTTATAATGCACAAGCAGAATCTTGCACAAatctgcagttttgttttttctatgaAAAGAGATTGTGTTTTGGGTGCCTTTATATTTCTCTGCCCCCtgcttgtatttttaaaatgacccTGTCTGTAGAAAATAGGcctatactgttttattaaattgtttaaattagaaataatatTCTAagaattatttaacaaaaattagtaatttataaacaatgtattaaaactgtatatacacacacacatactattCTTTACATTATTCTCTACCAGAACATGTTAAAACTAGTAAAGATTTTAGAATAATAATTGTTCAAGGGCATTTAATACTGTCACGCTTTACTGTTTGATTATCTGTATTCTTTATGGAGATACTAGTTTGTAACAGTAAAAGcagattgtatttaaattaaaaaaacgatTTAGAACACAACTGATGTTAATCTTTAGGTAAATGCATAATAGGACTGATACTGAGCcatataaagtattttatttatctatacatGTTCTTTGAGGTCTGGCTTTCAagtattaatttgtaaatgtagtTAAGAACCTGCTCCACGCAGAGAAGGACTTTTAGAAGTCTAGGTTATCTGTTTTATGCTTTGTTTTCAGGGTGTAGTTCTGTAGCAGAACCTGAATGGGTTTTATATGTAGTTGTTTGCAACACACACCCATCATTCTACCTGAAGGACATATCAgttttaaactgctttaaaatgtcatctAAAGTGCATCTAGTACCTCTTCTTTGAAAGGTTTACATTTGAAGAACGGTGAACAACAATCCTACGATCAACAGGAAAACTACAAAATCTGCAAACCTGCAtgaatgtagtttttttaattcactttaaaCTAAGACCcagttgatattttaaaaactgataaTCTTTTCAAACATGTTCTTAAGTCCTGTTTTGTATAATTACTGTTTCTTCAAGTATGAATTCATATCTCAACATCATAGTTTTTACATGAGATATCCATGAATCAAGTCtgttaaatctatttaaatataaatgtatatatttgattgtaGTTTATAAACCATACAAGTTGTTGATTGACATCAGGTCTGTAGAATCATCCACTATGACTTAACTATGATTTTCCTTGTAGTATTTCATTCTACTggcaaatagttttttcttaattagtaCAGTAATAACTGCAAGCTTGTAAAGCTATACATGAaacggttaaaaaaaaaaaaagtaaattgtaaaaagcaaaaaaattgtaataagGTGTATAATAG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K12303 SLC17A9; MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35575 lncRNA downstream 157448 42091457 ~ 42092198 (-) True G28410
TU35570 lncRNA downstream 165189 42083474 ~ 42084457 (-) False AMCG00008095
TU35535 lncRNA downstream 403659 41844956 ~ 41845987 (-) True G28378
TU35534 lncRNA downstream 406494 41842802 ~ 41843152 (-) True G28377
TU35523 lncRNA downstream 422880 41826442 ~ 41826766 (-) True G28366
TU35621 lncRNA upstream 16168 42283959 ~ 42290245 (-) True G28446
TU35634 lncRNA upstream 33486 42301277 ~ 42302097 (-) True G28456
TU35673 lncRNA upstream 93117 42360908 ~ 42401074 (-) False AMCG00008104
TU35703 lncRNA upstream 207929 42475720 ~ 42476990 (-) True G28509
TU35706 lncRNA upstream 232886 42500677 ~ 42500996 (-) True G28512
AMCG00008095 mRNA downstream 160153 42084256 ~ 42089493 (-) True AMCG00008095
AMCG00008091 mRNA downstream 251962 41977687 ~ 41997684 (-) True AMCG00008091
AMCG00008089 mRNA downstream 306058 41925845 ~ 41943588 (-) True AMCG00008089
AMCG00008086 mRNA downstream 378935 41851208 ~ 41870711 (-) True AMCG00008086
AMCG00008085 mRNA downstream 399692 41847208 ~ 41849954 (-) False AMCG00008085
AMCG00008101 mRNA upstream 27651 42295442 ~ 42299333 (-) True AMCG00008101
AMCG00008100 mRNA upstream 42841 42310632 ~ 42330478 (-) True AMCG00008100
AMCG00008103 mRNA upstream 63348 42331139 ~ 42354632 (-) True AMCG00008103
AMCG00008104 mRNA upstream 92109 42359900 ~ 42373792 (-) True AMCG00008104
AMCG00008108 mRNA upstream 262290 42530081 ~ 42537841 (-) True AMCG00008108
TU35536 other downstream 399756 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 1047821 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 1232398 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 2745054 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 3157891 39088922 ~ 39091755 (-) False AMCG00007993
TU35782 other upstream 493213 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 2150083 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 3782904 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 4213155 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 5446143 47713934 ~ 47918462 (-) True AMCG00008245

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042839 False 2410 mRNA 0.48 13 NC_007134.7 17522867 ~ 17549145 (+)