RNA id: AMCG00008101


Basic Information

Item Value
RNA id AMCG00008101
length 1191
RNA type mRNA
GC content 0.54
exon number 5
gene id AMCG00008101
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42295442 ~ 42299333 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCAAGTTTCTTCTCCTGGTCTCATCTTTGCTGGTCTTAATCTTGCCATCGTCGAGTGAATGCCATCCTGCAGACATCCCCAAACAGCAGAGCAGGAGGCTCAGCAGCACAGACTATGAGCTGTGGgcaaaacagcagcagcccGCATCGCAGACGGACAGCGTGGAGCTGATCCCTGAGCCGGACAATGATTCTGCACTGGAAGAGGACGCCCTCCTGGCCAAGAAAGGGTTAAGTCAGGTGTGCTCCGCCACCGGGCAGAAGACAAGCTTGGAAGATGTCCGCAACGAGAAGGAAGAGATGCGATCGAAGAGGCTTGAGGCCAAAGGCAAACCCAACTCCCTGGATCTCACATTTCATTTGCTCAGAGAGTTTCTAGAAATGGCCAAAGCTGAGAAAATGGCCCAAAAAgccatgaataataaaaaactaatgCAAGCCATAGGGAATGCAAGCGCCACACTGAATGTGACTCCAGACACGCTGCAGGACGGCCACCATGCCCAACATGGTGAGGAAGAGGACAACGGCCTAGTGAGGGACAACAAGCAGTGTGAAATGAAGGTGATGAGAAAATGGGACAGGACTAAAATCCACAGCTCCACAAGCAGAGAAGGAACATCACTAGACATCTTAGACATTGCAGTAGTGGTATTTATGTGCCAGTGCCAGGCTGAGCTGACTGGCAGGCCTTTCACTGACCCCAGCCCTCTCCACAGCCAGGGGCACACAGTCCTGGCAAATCTCCGGCCCTCCTCTCAGCACAGGACCGGCTACGTCATCTGTGGCCACCGGGATGAAATCAGTGGTCATCCACAGCTGCCTGGGGTCCCCCTTTGGCTGAGGAGGCTCACTGGACAGGCCCATGGTGGGACTAACTACCTGCCAAGCATTGGACTTATACCAGCTTGGATAGAGCCTGGTCTCATCACTGGCCTCTGCCAAAAGTCCTTGTATCTCCAAGTCATTTGCATCATGCTCCTCAAGAGATGGCTCCGGGTCGTCCTTCCCTCAACCTGCCCCTTGGCCTCCTCTGTCTCCCCAAAGACGCTCTTCACCAGGGCTTCTTCACTCTCCTCCACCGCCCCCTGCTCAGGCTCCTCGTCCCCggcctcctccacctcctcttccACTAGAAACAAGATTCCCATTAAAGAGACCCATATGCTCCACGACTGTGATCTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35621 lncRNA downstream 5197 42283959 ~ 42290245 (-) True G28446
TU35575 lncRNA downstream 203244 42091457 ~ 42092198 (-) True G28410
TU35570 lncRNA downstream 210985 42083474 ~ 42084457 (-) False AMCG00008095
TU35535 lncRNA downstream 449455 41844956 ~ 41845987 (-) True G28378
TU35534 lncRNA downstream 452290 41842802 ~ 41843152 (-) True G28377
TU35634 lncRNA upstream 1944 42301277 ~ 42302097 (-) True G28456
TU35673 lncRNA upstream 61575 42360908 ~ 42401074 (-) False AMCG00008104
TU35703 lncRNA upstream 176387 42475720 ~ 42476990 (-) True G28509
TU35706 lncRNA upstream 201344 42500677 ~ 42500996 (-) True G28512
TU35727 lncRNA upstream 223472 42522805 ~ 42594860 (-) True G28532
AMCG00008096 mRNA downstream 27651 42249646 ~ 42267791 (-) True AMCG00008096
AMCG00008095 mRNA downstream 205949 42084256 ~ 42089493 (-) True AMCG00008095
AMCG00008091 mRNA downstream 297758 41977687 ~ 41997684 (-) True AMCG00008091
AMCG00008089 mRNA downstream 351854 41925845 ~ 41943588 (-) True AMCG00008089
AMCG00008086 mRNA downstream 424731 41851208 ~ 41870711 (-) True AMCG00008086
AMCG00008100 mRNA upstream 11299 42310632 ~ 42330478 (-) True AMCG00008100
AMCG00008103 mRNA upstream 31806 42331139 ~ 42354632 (-) True AMCG00008103
AMCG00008104 mRNA upstream 60567 42359900 ~ 42373792 (-) True AMCG00008104
AMCG00008108 mRNA upstream 230748 42530081 ~ 42537841 (-) True AMCG00008108
AMCG00008112 mRNA upstream 398804 42698137 ~ 42704412 (-) True AMCG00008112
TU35536 other downstream 445552 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 1093617 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 1278194 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 2790850 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 3203687 39088922 ~ 39091755 (-) False AMCG00007993
TU35782 other upstream 461671 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 2118541 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 3751362 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 4181613 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 5414601 47713934 ~ 47918462 (-) True AMCG00008245

Expression Profile