RNA id: TU35677


Basic Information

Item Value
RNA id TU35677
length 1672
lncRNA type sense_over
GC content 0.41
exon number 4
gene id AMCG00008102
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42413632 ~ 42437228 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCCTGGCAGAACAAGATTCTGGTGAGGTAGATTAGCACGTCTCCAACAACCTGTCATCTTTGTGATTTACAAGGTTTTAGTTGAGTGTTTTCACACACGAACAGCAAAGTTATTGTAGTACTAATGTTGGTCAGCCAAGGACATTTGAAATGAGTGATCGGCTTTTACAAACCGTAGTAGACATGCACTTATTTGGCTGTTGAAATTAGTGAGTCCAAGTAGGTGGAGTGTGCAGTTTGTGAATTAATGTTTGAATTGGATCACGGTTTAGTGTGTTTGAGGTCAGAATTTGCTTAAGGAGATTAATTAATAACCCCTGTTAAAGATGCcagatataatttaattaaagttctGGGAATTGTGTGTAGTTGAGGGGTTCGGGGaagacataaatataaatatgaaagacTTAACTGGATGAGGATGTTTATAAGGAGCCGGGCATATGAGGGCTGTGTGGGAGAGACTTGAGCTGTTACTGTTGCATTGGCCGCTTCCACACATCTCTAGCTATTTCTGAAGTGCTTAAGTCCTGAGGGATGGTGTTTCAATAGCCTGTGTTTAGGAATACTTTGGGCAGAAGCAATTTTCCTCGAAGCCCGACCTCAACGGAAGACCAAGAGTGTAGACGCTTTGAAGAAATGTGAACATGATCCTCACGTCTTGCTTGCAGTAGCAAAATTATTCTGGAGTGAGAGGAAAATAACAAAGTCTAGAGAGTGGTTTCTCAGGACCGTGAAAATCGAACCAGACCTGGGGGATGCCTGGGCTCTCTTCTATAAGTTTGAACTTCAACATGGAACTGAGgagcagcaggaggagATCCGGAAGCGCTGTGAGAACGCCGAGCCGCGGCACGGGGAGCTGTGGTGTGCCGAGTCCAAACACATCCTCAACTGGCAGAAGAAGATCGGAGAGATCCTCGTCCAAGTCTCCTCTAAGATCAGAAACACCTTCTGAACAGCATTCCTTGTTTTTATACCCCAAATAAAAGTTCCCAGAGCCACATCAGACCACATTGCAAGCAtgctttgcttttgaaatggcATGTAAACTGAAGGCTTTGTATTTAGCTTTTTCCCCTCCCCTTAAATGAatcaatatgtatattaaaatactgttttggaTTTCATCAGCTTTGGATTGGCAGTGCTTTTTCCAGCTTCTTTCTTTTCCACTTTGGTTTTGAGGCTATGATGTTGCCCTTTTCCAGTGACTGGAAAATGACTCATCGGCAGATTAAAAgtataaactgaaaaacatcttctttttaaagattttagttgttttcttttgcagtaTTTGATTAAGCAACAGTTATTTGAAACTGTTTATGATGTCCTGTGTATTGTTAGAATGCTTGAATGGTTTGAACCCTGTGTTTATAGTTCAGTATTTATGAGTACTGACCGGCTATACAAGCACAATGTTGTTCTAACTGTCATGTGATCACAAGCTGCTGCTTGTAAAATCCTGCTATCTTGTTTGCAATAAGTGTTATTTGTTAGGGAAGGGAGTAAAAATGCAGTCTGACACTTATGAATGAGCTGTAAACACCTGTGCTGTTGCATTAGATAAGTTATTTTCAGATGATGTTTCTAATAAAAGGTATTTGATTATTCTGACTTCAGTGTGACTGAGACTATGTCTGACCACTTAAGAGAATGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35590 lncRNA upstream 246454 42117921 ~ 42186382 (+) True G28421
TU35585 lncRNA upstream 322761 42106867 ~ 42110075 (+) True G28416
TU35554 lncRNA upstream 452752 41977259 ~ 41980084 (+) True G28394
TU35471 lncRNA upstream 496622 41925845 ~ 41936214 (+) True G28332
TU35472 lncRNA upstream 567810 41846992 ~ 41865026 (+) False G28332
TU35705 lncRNA downstream 63446 42500674 ~ 42500981 (+) True G28511
TU35721 lncRNA downstream 147004 42584232 ~ 42586668 (+) True G28527
TU35743 lncRNA downstream 184722 42621950 ~ 42622157 (+) True G28548
TU35847 lncRNA downstream 671822 43109050 ~ 43120781 (+) True G28637
TU35900 lncRNA downstream 740574 43177802 ~ 43201203 (+) True G28678
AMCG00008099 mRNA upstream 132497 42290716 ~ 42300339 (+) True AMCG00008099
AMCG00008098 mRNA upstream 143400 42279769 ~ 42289436 (+) True AMCG00008098
AMCG00008097 mRNA upstream 219751 42212372 ~ 42213085 (+) True AMCG00008097
AMCG00008092 mRNA upstream 332456 42091557 ~ 42100380 (+) True AMCG00008092
AMCG00008094 mRNA upstream 360663 42071749 ~ 42072173 (+) True AMCG00008094
AMCG00008106 mRNA downstream 1115 42438343 ~ 42442423 (+) True AMCG00008106
AMCG00008105 mRNA downstream 7408 42444636 ~ 42448120 (+) True AMCG00008105
AMCG00008107 mRNA downstream 72659 42509887 ~ 42520350 (+) True AMCG00008107
AMCG00008110 mRNA downstream 115169 42552397 ~ 42579983 (+) True AMCG00008110
AMCG00008109 mRNA downstream 218963 42656191 ~ 42657239 (+) True AMCG00008109
TU35555 other upstream 439459 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 2185598 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 2373450 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 2597900 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 2928459 39503079 ~ 39504377 (+) True G27847
TU35844 other downstream 668485 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 709545 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 855368 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 2585920 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 2712201 45149429 ~ 45171828 (+) True AMCG00008185

Expression Profile