RNA id: AMCG00008104


Basic Information

Item Value
RNA id AMCG00008104
length 2749
RNA type mRNA
GC content 0.41
exon number 5
gene id AMCG00008104
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42359900 ~ 42401074 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGAGccaaggaaattaaaaagaatgcACCAACTCTAAGAATCCTGAACTCGCCCTCGGGAATGAGATCCGCCAGTCTCAGGCAGTGCGGTCACTGCAGCAGTGCGGGGCTGAGACAGAAGGAGGCCGAACTGCCGAACCACACAGTGATCCGTCCAGGGGAGGCGTTTGCTGTTTACCACACCAGCCCCACGTTGTCCAGCCTCTCCAAGCCTGTTGTTCTCTGGACGCAGCAGGACGTGTGTAAGTGGCTGAAGAAACACTGTCCGCACAACTACCTAACCTACGTAGAGGCCTTCTCACATCACGCTATCACAGGACGAGCTCTGCTGCGGCTCAACGGTGAGAAACTGGAGCGTATGGGGATCGTACAGGAGACCCTGCGCCAGGAGGTCCTACAGCAGGTTCTGCAACTGCAAGTGCGAGAGGAGGTCCGGAACCTGCAGCTGCTCAGTCAAGCTTCCTTCGGAAACCTTTCTTAGCTCATCCGTCCGTTTGGCAGCCTGCTCTGGCACAATGGATGCCTGATACCTCTGGGAGGAACTGCAGACTCCAGATATCAGAACGGGGAAAATCATGCCCTGAATCGGAAAGGAGGCTTTAGCCAACCAGGGACGGATTCGAACGAACTGCAATTCTGCTTGGTTTAAGATGAACACACTGTCTAGGAGGGATGGACATTGTATAAAAGAGGATTCACAATAACAGCCTGCAATCTCATTTGAACATTATTAGTGAAAATCAAAGgaaaactctttttttttttactccacgGACAGAGCTTTCATCGGCcgaaaataagaataatttatCTTAGAGTCATCTTAGAGTCCTCACAGACGtgaaattgttaaaatgttggtgtgctttttcttttccacgtgctataggttttcttttttcttgcagGTTTGTGTCTCGGAATATATGTGTCTTGAAAACCTGGGGGGTTTCCAAGACACATTGTTGTTTCCTAACTCATCATACTGAATGTGGTTGAATGTCAGTATTCTTCAAATCCAGTCCTCAAGAGTCAgtgtttctggttttcattccacctatATGCTCTTAATTAGGTGATTGAACTAATTGAACTCCCATTTCCGGTTTCTAATGGTGGTGATTTCAATAAACTTATAAAACCTGTTAGAGTGTGACAGATGTTGTCTATACAAattctcaaaataaaacactctcagcagaacaaataaaaacatttggttGGTAAAggcattataataattacttgTCCCCCCATTATTGAGAGAGCGTCAATTGAAAGCATCACCCCACTTTTCTGTAAGACACGTTCATTTTTAGAAGTTATTTACAAGGTGTACAGGTGAAATTGTCCCACAACTATTTTTTCTATGTCCCCGAACCCTGCTCTACGACTCGACAACCCCACCTCCCTGCCGCTCAACAACACAATGAatgccccccacacacaactGCATAGAACCAAGGCCACCTGAAATTTtgacaaaacattttgatgTAGGGCATTTCTTCCATTCTTGAGAAAGCAATAACTACACAAGCATTAATGCTCCTTCACAACTGTGGTGTCGTGCCCAAGAACATTCTATGGTGACACTATTACTATGTGTACTAAATGTGTTCTCCATTTTTGGTTTCTCTTTGTGCGATGAATCATTCCCCTAAACTATTTTGTGGCTCCAAAGCTGTTTCCAGCATTCTTACTAAGTCTTTGATTGCTGACACATAATAAAGTATAAACCTTTTCATTACTGCACTTGCTCAAATGTGTGCCGTCACACATTGGGTAACATTTCATGAAGTGTATTTCcaaatcaaaatacatgttGAGCTCTGAAtcattatatttcacatttgttatGTAGTCAACACTATGCTCATGGACTTTTGACTTTAAAATGTTCTAGTTTTCCTACGAGGCAGATACCACTCAGGGGTTGGATATAGTGTGGAAAATTCTATGTCACTGTTGAGTCATTTGCCTATTCTAATACAGCTTTGAAGGATATTGCTCAGTATAACTACAGTATAAGAGTATTCAAACTTATCTAAAAATGTCCTGTTTTGTAGGTAGTTAACAAGATacaaaagttatatatatatgtataaatatatatataatataaaatatacaatatatataaacacacacaatggaacACTTCCCTGTGTGTTATAAATAGAAGTGTATGTACTTTACTTGCAGATTCAGCATGGAAGTGCTTTCAGAACAAAGCTTGTTTTCCAACCATTTCATTCCTGCTtcctacataaaaaacaaacaaactgtgagccattttgaaaatctgagttctgttcatttgtttgtgaTGCCGTTACCTTCGGGGAAGATGTCCGGTGGAAGTGACGAACAGTCACTGTTGTAGGAGACAACCTGACGTGTGTGGATTCTGTTTGCTATTCTTCACTTCTTTATTCGACCTCTCCCACAGACTAGCCTTCAGCGTTTTGCCATCTCTGTACATTCACAAGGGCGTCTGATCCTCGGCTGCGCTCGAATCGCGTGGATCTCTCTTCAACAGACTTTGACTGTTTGGAGGTCGGACAGACTGTTACTGCAGATGCACCTTCTCCACAGCTTCACCCACATGGTCTTTctttgtaacactttttttgcaaaagggatttgaataaaataaaaaataaaatgtgtgtaattaccAGCTGtacagaaattaatataaacagaaaggaaaacagttgtcttttttaataaaaaactaaaatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35634 lncRNA downstream 57803 42301277 ~ 42302097 (-) True G28456
TU35621 lncRNA downstream 69655 42283959 ~ 42290245 (-) True G28446
TU35575 lncRNA downstream 267702 42091457 ~ 42092198 (-) True G28410
TU35570 lncRNA downstream 275443 42083474 ~ 42084457 (-) False AMCG00008095
TU35535 lncRNA downstream 513913 41844956 ~ 41845987 (-) True G28378
TU35703 lncRNA upstream 101928 42475720 ~ 42476990 (-) True G28509
TU35706 lncRNA upstream 126885 42500677 ~ 42500996 (-) True G28512
TU35727 lncRNA upstream 149013 42522805 ~ 42594860 (-) True G28532
TU35870 lncRNA upstream 723406 43097198 ~ 43098473 (-) False AMCG00008124
TU36079 lncRNA upstream 1136968 43510760 ~ 43583413 (-) False AMCG00008144
AMCG00008103 mRNA downstream 5268 42331139 ~ 42354632 (-) True AMCG00008103
AMCG00008100 mRNA downstream 29422 42310632 ~ 42330478 (-) True AMCG00008100
AMCG00008101 mRNA downstream 60567 42295442 ~ 42299333 (-) True AMCG00008101
AMCG00008096 mRNA downstream 92109 42249646 ~ 42267791 (-) True AMCG00008096
AMCG00008095 mRNA downstream 270407 42084256 ~ 42089493 (-) True AMCG00008095
AMCG00008108 mRNA upstream 156289 42530081 ~ 42537841 (-) True AMCG00008108
AMCG00008112 mRNA upstream 324345 42698137 ~ 42704412 (-) True AMCG00008112
AMCG00008114 mRNA upstream 391201 42764993 ~ 42808108 (-) True AMCG00008114
AMCG00008118 mRNA upstream 641564 43015356 ~ 43028990 (-) True AMCG00008118
AMCG00008117 mRNA upstream 656064 43029856 ~ 43036431 (-) True AMCG00008117
TU35536 other downstream 510010 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 1158075 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 1342652 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 2855308 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 3268145 39088922 ~ 39091755 (-) False AMCG00007993
TU35782 other upstream 387212 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 2044082 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 3676903 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 4107154 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 5340142 47713934 ~ 47918462 (-) True AMCG00008245

Expression Profile