RNA id: AMCG00008106



Basic Information


Item Value
RNA id AMCG00008106
length 883
RNA type mRNA
GC content 0.44
exon number 5
gene id AMCG00008106
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42438343 ~ 42442423 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAGAAGCCACCACCGGCTCCCAGCGTAATGACGATCTGGCGAGTCTGCGCTCTGTGCGCACTGAGGCATGAGGTCCGGCGCATCGGCGCTCACACTGCAGACTCCACCGCTCCAGCCGAGCCGTTTATATCCTCAcccaacagcaacagcagggcTACTGGTCTCCTCACCCCAGGATACGGGACGTGTATGTCTGGGACGGGCTCGGGCTGTAGTTTGACCATGAGCAACATCTGCGGCAGTGGCTGGCTGACACCTGGGATTCGCACATCTGAGGACCATCCAGACGATGATAAATGGCCTGTGATCTGTGTCTTAGTGGTAACAGTACTGTTTCTGGACGTCTCAAACAGCCGACAGAAGTGTAACTATACTGAGATCCTCAACACTTACAAAGAGTTGATCGTGACAGAACTTCAGAGCCTGaATCTCACAGGCCTGTATGATTCATCAAAAGAAAGGAGGAATCAAAGGGACCAGTGCCCTTCTGTAAAGgtacaGAAGATCTTGAGGTCCATTTACAAAATGACACAACAATTTAAATGCCAAGTCAAAGAAAAGGATTCACGTGctgACAAGCACAGAAAAGGGTTCtgaatgcatacataaaaaacactttgggaggaaaagaagaaacaaatggCAAAAAGAAACCATCAATGCCTTAATACAATGTTGGCAAAAACTGCAAATTGTGTACTctccaaaagaagaaaaacataagcCAAGAAGAATGCCTATCTGAAGAACATTTTCTTTACTGTTTTATGAATATCCAAAAAGGATATAagtaattaatgaaaaacactagtggctatttgctttattttttatagcttGACACCATAAGAACTACATgcatatattttctattatctgatgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU35677 lncRNA upstream 1115 42432836 ~ 42437228 (+) False AMCG00008102
TU35590 lncRNA upstream 251961 42117921 ~ 42186382 (+) True G28421
TU35585 lncRNA upstream 328268 42106867 ~ 42110075 (+) True G28416
TU35554 lncRNA upstream 458259 41977259 ~ 41980084 (+) True G28394
TU35471 lncRNA upstream 502129 41925845 ~ 41936214 (+) True G28332
TU35705 lncRNA downstream 58251 42500674 ~ 42500981 (+) True G28511
TU35721 lncRNA downstream 141809 42584232 ~ 42586668 (+) True G28527
TU35743 lncRNA downstream 179527 42621950 ~ 42622157 (+) True G28548
TU35847 lncRNA downstream 666627 43109050 ~ 43120781 (+) True G28637
TU35900 lncRNA downstream 735379 43177802 ~ 43201203 (+) True G28678
AMCG00008102 mRNA upstream 1160 42413632 ~ 42437183 (+) True AMCG00008102
AMCG00008099 mRNA upstream 138004 42290716 ~ 42300339 (+) True AMCG00008099
AMCG00008098 mRNA upstream 148907 42279769 ~ 42289436 (+) True AMCG00008098
AMCG00008097 mRNA upstream 225258 42212372 ~ 42213085 (+) True AMCG00008097
AMCG00008092 mRNA upstream 337963 42091557 ~ 42100380 (+) True AMCG00008092
AMCG00008105 mRNA downstream 2213 42444636 ~ 42448120 (+) True AMCG00008105
AMCG00008107 mRNA downstream 67464 42509887 ~ 42520350 (+) True AMCG00008107
AMCG00008110 mRNA downstream 109974 42552397 ~ 42579983 (+) True AMCG00008110
AMCG00008109 mRNA downstream 213768 42656191 ~ 42657239 (+) True AMCG00008109
AMCG00008113 mRNA downstream 249603 42692026 ~ 42692859 (+) True AMCG00008113
TU35555 other upstream 444966 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 2191105 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 2378957 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 2603407 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 2933966 39503079 ~ 39504377 (+) True G27847
TU35844 other downstream 663290 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 704350 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 850173 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 2580725 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 2707006 45149429 ~ 45171828 (+) True AMCG00008185

Expression Profile