RNA id: AMCG00008111


Basic Information

Item Value
RNA id AMCG00008111
length 4402
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00008111
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42704984 ~ 42713579 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACCTTACCTTCGCAATCTGCTGGAAATCCCCGCACTCGCTCTGCGCATGCGTGACGCGCCGTCCTAGCCCGACGTAAGGAGCGGGGAGGAGCAGCGCGGCGGCAGTGCATGCATAATTATCACGACGGATCTAATTCGCATACCATTAAAAACGCGCAACTTGTTTGTGTGGTTAGCCCGTGTGTGCTGCCTGGCCTCACCTTGAATCCTGCATCTTTAAAGGCTCCACTGTGGTATTTTCACGGATTGTATTTATTACGATATTTACAATCCGGATCCGAGTAAacaagtcattattattattatcccctGACACCAGGcaatatgcatgcatgcacactatAGCTCCCATCCGCATATGCATCCGACGTTACCGATCATTTAGCCATACTTGTGCAGTCCCATCTTTTTTAGGATCTGAACCATTTCGCTCCTCCTACAGCAGGTTCGGCGTTATGACGTTATGTCCTCGGTAGACTTGGACAGCCTACACGGAAAGACAGTTTGTAAAGGAGCCGGCTGTGCAAGAAATGGCGATGTTTGGGAGCCTGGATGTGGCATTTAAGAAGAAGAAAGCCGAGGATGCGGAGAGGGACCTGTCCGAGTTCGTGTGCCCTGTTTGTCTGGAGATATTTGACCTTCCCGTGACAACACAGTGCGGACACACGTTCTGCAACAGCTGTTTGCAGGAGTGCCTGCGCCCCCAGAAGCCCGTGTGTGCCGTGTGTCGGACAGCTCTCAGCAAGTGGAATATGGCCGTGGAGTTGGAGAAACTCATCCACAGCTCGCTGGGGTCCTGCAAAGGCTGCCACGCAGagGTGAGTCTGTCTCAGATGAGGAGTCACACAGCTGTCTGCCCCAAGTATCAGGAATACATTGACGAGGGTGTGAAGACTACTGCGAAATCTCAGCCCCCTGTGGTCAGCTCTGTGCCAAATCGTTACACGTTCACCTGCCCCTACTGCAACTTCCAGAACTTGGATCAGGATGGGCTGGTAGAACACTGCACCTCCCAGCACTCCAGAGACTCGCGCCATGTGGTGTGTCCTATCTGTGCCTCGATGCCCTGGGGAGACCCGAATTACAGGAGTGCCGATTTCTTCCAGCACCTGAAGGTCCGCCACACTTTCTCCTACGACACCTTTGTGGATTTCTCCACAGATGAGCAAGCCATGATACAGGAAGCCCTGCAACGCTCCATGATGGATAACTAGGGAACCACACGAGGGCAGTGCTGAGCCTCTGAGCACCCCATCCTGGTCAAGGTCTTCTAGCTTTTTCCAGGGGAAGCACGAATCATAGTCTACCCATagcacttttcttttaaatattccaGTTCAATCACATTATATCACACCTCCTCCCCctatttttaatagtttagtCTATTGCTAATTAAGGGTGTTTATAATAGACAAActggtttattttgcattgattagGTGAATCCTCTTCGGAGAGAGATTTGTTGTTCCTAATGCCTTGAGTGCTTTTGGGTTTTTGTGATTTCTAGCCGGTCAGATCTGTGATGAGCAACAATCACGCATCTGCCCAATTAATTTTTTAGGGGTActtgcagattaaaaacatttaagatgTGTGTGCGTGGTGGataaccattttaaattaataatatgctGAACTGCTTGATTGGAAAACCTCACATTcgtaatgtaaagaaaatacagaaaataatgacatgACCAAGTCAGTCCAGAAGGTGGCGTCTTCTCCTTGAACACCAGTTTCTCCTCCATCAGCTGCAGACTGAGCGCTGAGCACGTTGTGACCTTATTGGAAACTGCTCTGTCGACACATTGGATTAAGGACCCAGGAAGGGACAatattgctgtatttaaatCCTGCCATCATATCACTCCTACAGATACCTGAATAAGGGGGCAGGGGGAATTATGTTGTTCCATAGCACAGATATTACAGCATCATTTCCTGGCTCATGATATGGTAGCGTTAATACACAGGGGGACACCCTTAAATCCATCAGGGCTTCTCTGAATCCTAAAAACGTGAAGCAACTTTGTCCTGAAGACGGCCAGTCAGTCAGCAGCTATAGGACATCTTAGTTGCCCATTGCTAGCTCAACACACTCCAAAGGTGTTACCTGCTGCTTAGTCTCTTGGAGTAATTATGTGCAGAATAGTACTGTTCAAGGCCTCAACAGAGTTAATTACAGCACAACCTCCAGCATGTGGCGCTGTTGTTCCATTACATGACACTTGATGTCCGCCGCTTCAGAGAAATGCTGCCAACTAAACCAAGCTACTCGCCaaatttaaacaacaaacaaatgaaaacaattgaCCAGTTACAAATTAAGACAATTACTGTCCCCGTGGcttcagattttttgttttttccagattcaccaaatgttaaaaaaacaaaaaaaacaggcatgGCAGTGTGGTACGTTTTAAAggtctgcaaaataaatacatatgattaAATAACAAATAGTAATTGTGTATCTTGGGGGAAAAGTACTGATAATTTGAAAGTTTTATTTCTAATATGAATGCGTCTCATTAAACTTGACCCACCTATTGCTATACATTTATTATCTTCAGATTCTTGAGATTCTCACTTCTGCTGATTTTGGTTGGATAGCTTGCACTTGCAGTTTCAAAGCTCTAGGCTCGCTGTGTGGCTGCTTTTTAGTGTGGAGGATCTCTGTGTACCTCATTTAACAACAGGCCTAGAGGATTGAAGACGGGATATTTCGGGATCCTTAGTGATTTAACTTATTACAGTGCTTCTCATTGAGcaactggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatataaacaagtcAGACAAACATAATCTTAGGACAGTGTATTAAAAAGATGTAGGTGTTTATGACTATGAAACAATATCAGATAATTAATTCACACTATACTGCTGTGTTTGCTCACCCTCCTTTCTCTTGAAAAGTGCTTTAATTCACATTTATGTAACTACTCAGGAAATATGGATGTGTCTTAAGGTTCTTCTCTGTTGTGATTTGGATATTTCATGCAGTAGTTCTCGCCATGCATGAGACCTGCTGGCATAAGACAGGAATGGACATGAATCCATCCACATCCACGTTTCCTAAGTGCTTAGAATTACCAACACAAATTAAAGCCTCCTAAGGAGAACGTGAGGAAGGTATGCAAACTGCACCTCAGCATCCATGCAGCCGAGATTAATACAGCTGCGCACGCGACCGAGAGCTTCAGATCCTGCGATGTGCCAGCAGTCTCGCCATGCGCACAACGATACCAAATGGAAGTGGACGGCATGTTGGGATGGGAATGCTTGAGCTGCAATGTTGAGCACTGTTTATTTCCCTCTCCCTGTGCTACTGAAACAAGCCTGtttctaaataattaatcttgTAAATAATTATCACATTTATCATACTTACGGATGGGGAAACTCATTTGGTTGGAAGATACCATCATGTTTTGGTAAGAGCTGGTTTAATGACTTCCCTTGGGTGGGAATTATGTTCCTGATTTGGGGGAAATCCCATTTCTGTGTCAGTATTGCAGAGGGAAGCCAgtaattacatgtaaaaaataataataatttgtaggATTGACCACTTCTGAGCTACCAGACTAACTGTGTAATGGACGAGCTGCTGTCTGTGTTGATGGTGTAGTTGAGAGTAGTACCTATTTTTCTGTATCCCTTTTGTACTTGCTCCCAGCACAAGATGTTCAATAGCACTGCCGACAACTTCCTGAGGATGAAATAAGCCTTCATGTAGCACAGCACTGTCAATACACACTGAGCCTCTTCCACAGCAACTTTTACTAGGCAGTTTGATATGCTCCTTTATGGTGTAATGTTGTAGAGTGTTTCCCTTTCcactatataaataaacagcctaTATCCAATCCACTGTTCTTTCTCCTtaaattgcttgttttttttaatctgctgaTTTAAGAATAGTTTGACTTTAAGCActtcattttcccttctttcATATCTAATATCTTTTAAGATTCTTACCATTAACATCTATGAAATGTCAATCTTCTTTTGGagcaaaaagcagaaatgttcaGCTGATTATAATATGCAAACGTGtgtcagagagaaagacaaaagaaaaagacatgaTTTGCTTCTTTGAGTAATGATTCTGGCTAATATATTGTTTACCCCTAATTTGCAATTGTGTTTTCGTTTTCAACAACATGATCCTGTGCAATCATACTTCACGTTGACCATATCAGCCGATGTCTTTAGCACTTGGCTATTCTGAACACTGTACAAGGGGCACCGATACGCAAAAACAGTCTAtgcatattatatttcataatagttttttttttttttttatcttaataaaaccctttttaaatgtta

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15697 RNF114; E3 ubiquitin-protein ligase RNF114

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35743 lncRNA upstream 82827 42621950 ~ 42622157 (+) True G28548
TU35721 lncRNA upstream 118316 42584232 ~ 42586668 (+) True G28527
TU35705 lncRNA upstream 204003 42500674 ~ 42500981 (+) True G28511
TU35677 lncRNA upstream 267756 42432836 ~ 42437228 (+) False AMCG00008102
TU35590 lncRNA upstream 518602 42117921 ~ 42186382 (+) True G28421
TU35847 lncRNA downstream 395471 43109050 ~ 43120781 (+) True G28637
TU35900 lncRNA downstream 464223 43177802 ~ 43201203 (+) True G28678
TU36139 lncRNA downstream 1180530 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA downstream 1180606 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA downstream 1180606 43894185 ~ 43895128 (+) False G28862
AMCG00008113 mRNA upstream 12125 42692026 ~ 42692859 (+) True AMCG00008113
AMCG00008109 mRNA upstream 47745 42656191 ~ 42657239 (+) True AMCG00008109
AMCG00008110 mRNA upstream 125001 42552397 ~ 42579983 (+) True AMCG00008110
AMCG00008107 mRNA upstream 184634 42509887 ~ 42520350 (+) True AMCG00008107
AMCG00008105 mRNA upstream 256864 42444636 ~ 42448120 (+) True AMCG00008105
AMCG00008115 mRNA downstream 47947 42761526 ~ 42762545 (+) True AMCG00008115
AMCG00008119 mRNA downstream 298929 43012508 ~ 43018451 (+) True AMCG00008119
AMCG00008116 mRNA downstream 339089 43052668 ~ 43055685 (+) True AMCG00008116
AMCG00008120 mRNA downstream 431226 43144805 ~ 43156072 (+) True AMCG00008120
AMCG00008121 mRNA downstream 445990 43159569 ~ 43175126 (+) True AMCG00008121
TU35555 other upstream 711607 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 2457746 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 2645598 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 2870048 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 3200607 39503079 ~ 39504377 (+) True G27847
TU35844 other downstream 392134 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 433194 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 579017 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 2309569 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 2435850 45149429 ~ 45171828 (+) True AMCG00008185

Expression Profile