RNA id: AMCG00008113



Basic Information


Item Value
RNA id AMCG00008113
length 834
RNA type mRNA
GC content 0.60
exon number 1
gene id AMCG00008113
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42692026 ~ 42692859 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCACTGAGATCGGTCTTGTGCTTCCTGTTGCCTGGAGCGCTGGCTGTCATAGCATGGGGCTGGTACCTTTCACGCAAGAAAGAGGACGGTGATGCCTGCCACGCCACGGAGGGGGAAGCGGGACAGGAGCTGCCTGAACAACACAGCCTCACGGCCCCCTCCCGCAAAGGCACCCACGGCAGCACGGCGAATAGCAATGGCCTCGATGGTGCCCCCCTCAGGAATGGCAGTCCCGGCCCGAGTCAGAGCGGGCTCGATCCTTCTGAAGGCTCCGATGTGAAGGACTCCGTGGCCAGCGGCTATATGCTGCGAGAGATCGCCCGCTGCGCCGACAAAGCCACACAGACGGACAACCTGAATGAGGTTCCTGAGGCCGAGGGCTCTTTACGGGACCTGTCCCGAGCAGATATCGGACAAGCCAGGGGCGTGGACGTAGGAGTAGGCCAGTCTGAAGAGGACCTCACCACGGAACCTCCTCAGAAGCCCTCTGCAGAGAAACAGAGCAATTCAGAGGTGACCGAACTGCAGAAGAGGTGCGATACAGCCCTGCAGACAGTGCGCGCCCTGGAGCGTCAGCGGGACACATTGCAATATGAAGTGGATCATCTGCGGGACACCCTGATGGAGGCGGAAGAGATGCAGGCCGAGGCACACCGAGAAGGTGTTGACCTGAGAAGGGAGCTGCGCAGGGAGGAGGCAGAACGGAGACGCCTGGAGGCTGGTTTCTCTGATCTGCAGAGGCAGTTGAAGATGATGAGCAATGGGGCAGAAGGAGAGCAGGAAGTGAGCGATGATCAGTGTCCCATTCTGGGCTCTGCTGGGGAAGCGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU35743 lncRNA upstream 69869 42621950 ~ 42622157 (+) True G28548
TU35721 lncRNA upstream 105358 42584232 ~ 42586668 (+) True G28527
TU35705 lncRNA upstream 191045 42500674 ~ 42500981 (+) True G28511
TU35677 lncRNA upstream 254798 42432836 ~ 42437228 (+) False AMCG00008102
TU35590 lncRNA upstream 505644 42117921 ~ 42186382 (+) True G28421
TU35847 lncRNA downstream 416191 43109050 ~ 43120781 (+) True G28637
TU35900 lncRNA downstream 484943 43177802 ~ 43201203 (+) True G28678
TU36139 lncRNA downstream 1201250 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA downstream 1201326 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA downstream 1201326 43894185 ~ 43895128 (+) False G28862
AMCG00008109 mRNA upstream 34787 42656191 ~ 42657239 (+) True AMCG00008109
AMCG00008110 mRNA upstream 112043 42552397 ~ 42579983 (+) True AMCG00008110
AMCG00008107 mRNA upstream 171676 42509887 ~ 42520350 (+) True AMCG00008107
AMCG00008105 mRNA upstream 243906 42444636 ~ 42448120 (+) True AMCG00008105
AMCG00008106 mRNA upstream 249603 42438343 ~ 42442423 (+) True AMCG00008106
AMCG00008111 mRNA downstream 12125 42704984 ~ 42713579 (+) True AMCG00008111
AMCG00008115 mRNA downstream 68667 42761526 ~ 42762545 (+) True AMCG00008115
AMCG00008119 mRNA downstream 319649 43012508 ~ 43018451 (+) True AMCG00008119
AMCG00008116 mRNA downstream 359809 43052668 ~ 43055685 (+) True AMCG00008116
AMCG00008120 mRNA downstream 451946 43144805 ~ 43156072 (+) True AMCG00008120
TU35555 other upstream 698649 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 2444788 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 2632640 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 2857090 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 3187649 39503079 ~ 39504377 (+) True G27847
TU35844 other downstream 412854 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 453914 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 599737 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 2330289 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 2456570 45149429 ~ 45171828 (+) True AMCG00008185

Expression Profile