RNA id: AMCG00008117


Basic Information

Item Value
RNA id AMCG00008117
length 4273
RNA type mRNA
GC content 0.45
exon number 4
gene id AMCG00008117
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43029856 ~ 43036431 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCGTTGCGCTGTGTCTACAGTGGGCTGCCCTGTGAGAGGAGGAAAGCCGGCTTGTTTGCCTACAAATTCAAACTGCGAGCCAATGAGCTGCAGCCTGCGGCCGGCCGAGCTGACGGGACCGGAGTCCCAGCTTCCCTCAGCCAATGCCGGCGGGAGAGGGACGGGTTTGTTTGAGTTTAAAATgccatatacatacacacacacacacaaaagagagTCCAGCTCGGCGTCGGGAGAGCAGTTAGTGCACGCCTGTCGGCATTACTGTAGTGGCGGCACAGGGTGAGCATGGCATTGTCGCAGTGCCTGGATGACTTCCCCTTCCCTGCCCTGTCCCCGGGTAGGCACCATCTCAAAGGCAGGGAGCTGTACAAGGAGACGCACCGGCTGGCGCTGGAGGAGCTGATCGTCGGGGGGAGGGAGTCTTACATCGGCTTCTTAAAGACCGAGAGGATCCCCGGCTTCCTTTCCGAGGAAGAAATTGGACTGATTACGGACTCGGTCGTGGTCCCGAAGAGCGTGTCGCTGAGCGGGGATGAAGCCGGCGTAGACCAGTCCGTGAGCAGCTCCATGGACTGCTCCTCCGTCACCTACTTCCCCGAGGTCTCGGACGTGGAGCCGCCGCTGCTGGAGATCGGTTGGCCGGCCTTCACCACCGGCTCCTATCGGGGAGTCACTCGGGCTGTGGCTCACTTCCAGCCCAGCTACGGGGACTGCATTTACAGCTGCAAGGAGGCGGCGAGGCGAATGATCAAGAGCGCAAAAGAGTTGATTGCCCTGGTAACAGACTCCCTAACTGACCTAGACATATTTCAAGATCTTCATGAGGCCTGCACCAAACGCAAGCTCCCCGTCTACATCCTGCTGGACCAGTCCTCTGTGCCTGCTTTCCTCCAGATGTGTAAGACCCTGGATATCCAGCTGGAGGATCTGCAACAAATGAGGGTGCGGACCCTCACAGGAGCCACATACTTTACACGATCTGGTGCAAAGATTGTTGGAAAAGTTCATGAGAGATTCATGTTGATTGATGGAAACAGGGTAGCCACAGGCTCTTACAGGTTTAACTGGACAGATGGCAAGCTGAACAGCAGCAACCTGATCGAGCTGTCAGGCCAAATCTCGGAGACCTTTGACGAAGAGTTCAGAATCCTGTACGCTGAATCCAAACCACTCAATCCCAAGGCACTCTATAGTCAAAGGAACAGTGGGATCTATGACCATCTCTTCCTCAAGGTGGCCCCAGGCCCAGAGCCACCCAAACCACATCTCGTGGAGCCTAGCATATTATCCAGCACACCCAAAAGAGCACAAACTATATCTGTGCTTCCTGGAGTTGATGACGGGGAGCTGCTTCCCAAAGACAGCCGGATGTCAGAAGCCTCCACCATTGGAGAGGACTGGTTGGAGAAAGACCACGTGGAGGAGGTCCTCACTGCTCATGAGGCCCCAACGGGTCAGGACACTGCCTTGCCTGTTTTAACAAAGGAGACAGGGAGTGAGGAGTCTTGTGTGCCCTTGACCTGCCATACTTCCACACAGACCAACATTCAGGTGGTAGAAAGTAGCATGCAGACTGATGTGGCTGTTCAGGAGACTGAAACCACCTTTACTACTTCTGCAACCCAAACAGCCAGCCAGGACTTGGTCTCATCCATGTTAGATTCCCAGATCTCCACTCTTCCCAAGGAACAATCCAGGGCCTTTAAACGGGCTCCAGCAAATCACTCTCCTTCATCCCCTGATGGCTCCCTGAGGGACTGCTTCAACAAGCTGACCAAGGAGCGCCAGTATCACTACTCCACCATCCGCTCCAAACTAGACCATATGGTGGCACTCTTGTCCCATCGGCGGGAGCTGGTGGACCTCACCAACCTGGCCTTCAACCCTGGCCATTATAAACTCAGGAAGGCCCATGAGCAGAGAGAGCAAAATCAGCTGATGCGGAGGGAGGCTCCTCGGCTGGTCCCTTTGATAAGGTCCAGATGCCTTAAGTGAAGGAGTCCTTCTCACAGAAAGATGGACAAAAACTGTGCCTGCATTCTCACCAGAACATTGCAAAAAAGCATCTGCTgatttatatatgatttataacTTCATAAATGGTCACTTAACACTTCTTGATAGAAATATAGAAAGGAGTCTTTTACTACTTAAAGGGAAACTTtggtattttgcattttagcctgatttcactcacccagagtcataggaatgcatggaaacctttttttgtttttctgtgtctcCAGTTTGAACGAATTAgaattttgcatttagttagtATAACAGAACTGCTGGATGCAAATGGTCGCAAATcactgactctcaaaagccaACTAATAGATCTTATAACTACTGCAAAGTTGGCCGTTTGTCATTTGTTGTGTAACAATACTATAAATAGTTCaataaattcattaatttactgaTAATTGTAAGAAATTAGTTTTCACATAATTGCTTATTGACAGACTACTTTTGGTTCTGCCTGTGCTCTCTGTGATTTCATTCACGCACAGCAATCTATTAGCTGACTTTTGAGAGTCAGCTTTTTGCGATCATTTGCGTCTAAGCTAACGAAATGCAAAATTTGAATTCCTTCAAACTGTATACACAGaccttaaaaatggtttccatgCATTCGTATGCTCTGGGTGAGTAGGAAATCAGGCTAAAGtgccaaaataccaaagtatccCTTCAAATTTCACAGTTGCTTTTAAATTGCGGAAAGATAATTTGTAAGTTAATAGTTCAACCTGTGCTGAATTGAGTGTTGTCCATAATGTAGCtgaatatatactttttaacaTTAAAGGATACTTAATGTTTTAGACTTTCATAACACTTGATTCAATAATAAGGAATTTCTCTGAAAGTGCAATGGAATGAAAGAGATAAATGAATGTTGTACATCTATTTCCCAACCTCCCAACAATATTGGGAAGCTATAGTTTACTGTCAATGGAAATTAGCAACTACCTTGTGGTTTACATCTGTACATTAACACTTTGCTGATATAGAACCGAGCACTGTCAGGAGGTTACCGTGAATTAATGAAATGTTCCAGTTTTGGACAATTGTTTTACTACGTTCTTCACTACTGCCAGCTTGGATTGTATATTGATATAAATCAGAATCTATTAACACAATGTAATCATTAAAAGtctcaaatattaaattatgctGCTAACAACTTAGGCAACCAAGTCAGGGTTTCCCTGGACTAGTGGATCATCGAGTGGAGGTGCGGGGATAGGGTAGTCGTAGCGAATGAGAAAATGGGGGGTTGGGTGGGGGAGTGATGAACGAGAGTAGGGGGCAGAGCTTGTGTGCTtgggttgttatttttttttggctgcCCCCCAGTATAATGGTAGGGGAAACACTGGaagttaagaaaaatatattggtttTAATTAGATTTCTGTGAATCGTGATACTACAATCAACACCCAGCTATCGTAAGACATTAATATTTTTCCAATGGCTGATATAAATACTTAGCTCTCATCATGTTCATAAGTTTACTACACCTGCAAAAATTATAGAAGCTCCAAATAATCCTGTGTAGTTGTCATATTGGCGGTTTTAtaagcatttcatttcacagtGGACGATATCTACTCTTGACTTAACTACAACTAGAATGTTGGCTTTTTAGGGGAAAATGCTGTGAGCCTTACCACCAGTTCATCTCTTTCAATGAATGTCTCCAAATGATCCATCCTGCACACCACAGAAATAAAGGCTGCCCGACAGAGAGGGTTTAAGCAGTGCTTAAATTGTTCTAAGAATTGTCACCAGGGAACCGATTTTCTATGTAGATATTAACCTCATGTTTTGTCGCCAggtcatttaattttgtttttttatttttgtttggttaattATAAACTTTATTTGCAAAAGCTCAGATCACAGGTTTACATGACACTTGAGTGAATTCACTGCTTCCTTGTTATGATAAAGGAAAAAAGGTTGATCCGTCTttctggtttcattttaaattctcctcagttgtgtttttttgggggtgttaaattgaaataaatcttATGCACCATGGGTTGTCAGATTGGTGCAGTAaacttgtttgtcttttgtttctttgggtGTGGtgtcttcatattttttcatggaataaaataatcatttatcTGTGAGTTGACATTTGTCTGATTTATACAAACATTTCGGCAGCATGAATCCCAACTCAAGAAAATTATTTAGAAGTTTGTTTGTCATTGTCTTAGTCTAGAAAAGGT

Function

GO: NA

KEGG:

id description
K16805 FAM83D, CHICA; protein FAM83D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35727 lncRNA downstream 434996 42522805 ~ 42594860 (-) True G28532
TU35706 lncRNA downstream 528860 42500677 ~ 42500996 (-) True G28512
TU35703 lncRNA downstream 552866 42475720 ~ 42476990 (-) True G28509
TU35673 lncRNA downstream 628782 42360908 ~ 42401074 (-) False AMCG00008104
TU35634 lncRNA downstream 727759 42301277 ~ 42302097 (-) True G28456
TU35870 lncRNA upstream 60767 43097198 ~ 43098473 (-) False AMCG00008124
TU36079 lncRNA upstream 474329 43510760 ~ 43583413 (-) False AMCG00008144
TU36187 lncRNA upstream 827176 43863607 ~ 43893808 (-) True G28900
TU36196 lncRNA upstream 857748 43894179 ~ 43895951 (-) True G28907
TU36208 lncRNA upstream 959687 43996118 ~ 44000866 (-) True G28914
AMCG00008118 mRNA downstream 866 43015356 ~ 43028990 (-) True AMCG00008118
AMCG00008114 mRNA downstream 221748 42764993 ~ 42808108 (-) True AMCG00008114
AMCG00008112 mRNA downstream 325444 42698137 ~ 42704412 (-) True AMCG00008112
AMCG00008108 mRNA downstream 492015 42530081 ~ 42537841 (-) True AMCG00008108
AMCG00008104 mRNA downstream 656064 42359900 ~ 42373792 (-) True AMCG00008104
AMCG00008122 mRNA upstream 2967 43039398 ~ 43043630 (-) True AMCG00008122
AMCG00008125 mRNA upstream 26403 43062834 ~ 43083682 (-) True AMCG00008125
AMCG00008124 mRNA upstream 60680 43097111 ~ 43120164 (-) True AMCG00008124
AMCG00008123 mRNA upstream 89323 43125754 ~ 43131680 (-) True AMCG00008123
AMCG00008126 mRNA upstream 97319 43133750 ~ 43143331 (-) True AMCG00008126
TU35782 other downstream 265202 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 1179966 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 1828031 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 2012608 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 3525264 39500321 ~ 39504592 (-) True G27861
TU36269 other upstream 1381443 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 3014264 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 3444515 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 4677503 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 5087494 48123925 ~ 48124682 (-) True G29544

Expression Profile