RNA id: AMCG00008120


Basic Information

Item Value
RNA id AMCG00008120
length 5097
RNA type mRNA
GC content 0.43
exon number 16
gene id AMCG00008120
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43144805 ~ 43156072 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCTGATCCAAAATAtttggtgtatgtgtgtgtgatggctGCAACCAGAACCTCTTATTAAAAAGCAGGGCTTGCAACTGAAAGCGGATTTATCTGGACGTCGCTGCACAGCAGCAGAGTTGCTACTATTTTACGGgttggggaaaaaagaggtTTTCAAAGAATTGCTACAGTACCAAATGATCCCAGATGCATTAGGCTACTTCTCGTGATtacaaatacatagataaatgaGCAATTGCAGTTTCACCCAGGTTAGTTAGAAGGTATAGGCTGGTATAGCTCATTTGCGGCCCTACATTGGTGAAGAGACGCAAGATTTAATGTTCACGCCTGCCGCTGACGCCGTGGCCGGGTACCCCAGTGGGAACATGGCAGAGAAGGATGCCAGCCAGGAAACGACGCTGGGCAGTGCCTACTCGCCGGTGGATTACATGAGCATCACAAGCTTCCCCCGCCTGCCAGAGGACGATGCCCTCTCCGGGGAGAACAACATCAAAACCCGCAAAGAAGAGGACAACTTTCTCAGTGAGCAGGATACCGACCCAGATCTGTTCCTGAAATCTGCTCGGCTGCAGCGGCTGCCCTCATCCTCCTCAGAGCTGGGCAGCCAGGATGTGTCCCCCCTGCGTGAGACGCACCGCGACCCCCTGGCTGGGGACTGCAGCTGCCGCCAGGACGGTCTTACCATCATCATCACAGCCTGCCTGACCTTCGCTACTGGCGTCACGATCTTCAATCAGGGTGCAGTGGTGACAGACGTGGGGCACTGCACCTCTGTTGGAGCAGAAGTGCTGAGCAAGCATGGCTCCTCTGTAGATGCAGCCATAGCAGCAGTCCTCTGTTTGGGCATCATCAATCCTCACATGTCTGGCATTGGGGGGGGTGGTGTGATGCTGGTTCATGACATTCGGAAAAACGAAAGCCGTGTGATCGACTTCCAAGAGACAGCGCCCTCTGCCATCCAGGAGGACatgtttcaatttaatttggagCAGAAgCCTGGCCTGCTGGTTGGTGTACCTGGCATGCTCAGTGGAATGCACCAGGCTCATCAGTTGTATGGACGAATGCCATGGGAAGAGTTGATAACCATAGCAGCGGATGTTGCAAGGAATGGATTTAATGTGACCCACGACCTGGCGGAAGCTGTGTCTAAAGTGAAAGATCAGAACGTATCAGACAGTTTCCGGGATATCTTCCTTCGTGATGGACAGCTGCTCCCAGGCTTATTTATGAGGCGCTTAGACCTGGCGGCCATCTTGGACTTGATTGCAACCAATGGAATCTCAGAGTTTTACAGCAGCAATCTCACCCAGGAAATGGTGCAAGCAAGAGGAGGGGTTCTAAACGAAGAAGATTTCAGTAACTACAGCACAGTATTACAGCAGCCCGTGGAGGGCCTATATCAGGGCCATCAGATCATAACTACACCCCCTCCGCATGCCGGGGCTGCCTTGATCACGGCCCTCAATATCCTGGAAGGATTCAACATCACCAGCCAGGTCCCCAGAAACAGCACCTACCACTGGATGGCAGAGTCCCTGAAAATTGCTTTAGCTTTAGCCAGCAGCTTGGGCGACCCCTTTTATGACCCATCTGTATCTGAGGCTCTGTCGCTGATGTTAAGCAAGTCAGAGGCTGCTTCTTATCGGCAAATGATCAATGACTCTCACACCTTCTCTCCCGGTCACTACGTTACTCCTTTCTATTCTCTGGAGCCTGAACCAGCCTCCAGCCAAGTTGTGGTCATGGGATCGGATGACTTCATTGTCTCTGTCATAAGCTCCCTGAATCAACCTTTTGGAAGTGGGATTATGACTCCTTCTGGGATACTCCTTAACAGCCAAATGCGTGACTTCTCTCTGAACACAACCCAGAGCTCTGTTTCGCTTCCTCTGCGGAACAGTATTCAGCCTGGGAAGAGGCCCTTGTCCTTCCTGACACCCACTGTAGTGAGGCCATCTCTGGGGCTCTGTGGCACCTATCTGTCAGTAGGGGGCTCAAATGGAGACAGAATGATCAGCAGTATTGCCCAGGTTATAATGAACGTCTTATCCTTCCACAAGAACCTGAGTGACAGCCTGACATTTGGAAGGCTTCATCCTCAGCTTCAGCCTAACATTCTCCTAGTGGACAATGAGTTTCCTGAGGAAGATATAGAGGCCCTGCGCTTGAAAGACCACCATGTGGAGAGGGTAGGGGTCCTGTCGGTGGTGCAAGGGACCAGGAGAACCAATGACCTCATCATCGGGGTGAAGGACCCCCGCTGTCCAGATGCATCAGCAGTAACAACATCCTAGCCGGCTGAGAGATTGAAAAAGTGACAGAGTGACAGAAAGATGGAGGGTTTCCTAACCTGGAAGGGTGACATGTGAGGGGGGTTTGAGGAGGGGCTAGCTGAGATTACCTAAAAGTGAAGACCTGTGAGCAGCTCAACATGTATTGTATATTCTCTCCACAGGTTGCATTCACAGGGCATGTTGCACACCAGTATGATGTACGCTGTATTGTTTAGTCTAAAACACGCACTCGCTACACTGTATATACCACTGAAAACCAATGATGCCCCTCTCTAAAGACTAACATGAACCCCTTCCCCACCCCCTGCTTCCCTCTCACCCTGTATTGAGGGGAGAAGTCATGTGCTGCTGAAATGTTCCTGCCATCAGCCCTGCCACTATAATAGCTCTATATAATATTAGTGCACTGCCTTGTCTGaagtggattttattttcctgattcAAAAGGGAAGTttgaaaatgcatataaatgatATTTACATAAGGGGCTCAAAAAGTCCCACTGTGGAAGTTGATATGACTGTGTCTTGACATTTGCTAAAAGTCCTGTCCCATTACTAGTACCCTTCCCTGAGATGCACCTTTGGGATGATCTTGATCAAGTTAATGGTGGAACTGAATACATGCATATTCAGCCACTGTGTTGTGACCAATGACCACAAGGATgctatgtatgtaaatgttcaTCTTCTGAAGCTGTTGGACACCTAGGTTTCCATTTTACCATCCAAGTCTGAGGCTAACGTGCAAAGGAGTGAAGGTTCTGTATGCCTGGCACTCTAAATTCTTTGATGGAGATAGAGAAAGACTTACGCTTGATTCTAGATCAGGCACTGAAAGATTTTATAAGGGTTAAAGATCTTGGGGAAAATAAAGggtttacagcatttaaatacagaatatgttacattgttttgtttttttaatttatattatttgttttaaatcttccttcatatttgatttaatctgcaCTATTAAATTCCTGTCCTGATATAGGGGAATAGGGACATATatgaagttttgttttttgattttgttttttcttaatttatttttttaaataagtaattagtGGTTTGTACTTGAAATACAGGTTTGTGATGGGAAGTCCTGATTAAGCCTTAAAGATTGATTCTGAGGTATAATTGTTTGGCTTTTGATCACAAAGTAAGCTTTTTCTGTAAGGCTGTTTACTAGGCTTTTGTAATAACAGCATTAGGCTGTTCCTAGCCCCCAGCGATGGGAcaatgttgtatgtatgtacactacTATTTCCTGTTCATGTTGTACTATTCTCCAATCAGTCTTAAGGcctagaaaatgtaaataacggAATGTATCAATGGGGGGAGGGGATGATTTTGAAGAAATTGACTCATAGTTTAATGTACCTACTCTTCTGAAGGATTTTGTGGGTCTTTGCAGTATAATATACACTGCCTAATCAGAATCTATACCTATATGAATAATAGGTGAAAAACAACTAGCagaacactttttaattttagtggTTATTGTGAGTGCtactatattgtatttgttttaccttcTCATTATGCTTAAGGCATAAACTTAATGTCACTAAGCTATTTTTTTATACCACAGAATGGAATATTGGTGTTCCGTTTTTGTGTAGTATGGTCATGTTGTGtttcaacttttgttttccCAATTTTATGAATTTTCTTGATAAACCTGACGCTCAAGCAGTTCATTTTTGTGAACCAGGATATGCTGGTTTTACTGAAAACATCATCTttctttgttgtgttacaaaagaaaaaataatgctgAGGATAACCTATAAATTATCAGCAACCTACAAGTTTAGAGACTCGACAAGTAGTACTGTAGAATtgatgagaagaaaaaacatgacaatgagtgCTGTAACTGTGATAACAGACAGTCTTACAGTAATAGAGATGGTTATATGGGACATGTAATTCTATTCATTTTCAGCTCTAGCAATTCAGATATAAGTTACTTATTTTTAGCATATTTCTCAAGAAAATATAGTAAATTCCAAAGTGGTTGATAAGTGAAGTTTCAGCTTGCTTACTAGCAATCAGTTTATGTCTGCTGTCCACACCAATGAAATCTATGTGATTCAATTGAGAAACTACTCTGGATTAAGCAACACTTAATTCAGCTCTAAAGCAGGCAGggacaacataaataaaaccaaatagtCTTGTTAACATTTAGGAAGATTTACCTTGGCAAATATTCCTCATATTGCTTAGCCTTCACTGTAAGAATGTCTGAATCAACAATACCCTTTCCAACTCTGTTCATTGGGAGTCCTActatccatttaaaatgtgatccagatatatatatatgaaacctGTTCCCTTTAAATAGTTTGCctttgatttatataaatatagaatacattttgcaaaggtggaaaaaaaatgaaaatcactaTTAAAATGTTAGCACTGTTGTTTGCCTAGCCTATCACTTTGCACAATACTACTGTGTCTTGTTATCAGTCAGACAGATGGAAAGTTGTGTACATAGAAAAATGAAGctgactgaattaaaatgtgtccATGTACTTTTTTTCTGATGTTACTAGTTTGTTTGCAGTGGAAGGTAATGAACCTTAGATTCATGCAACTGGatgaagctttattttttaaataaagctgacactttaaaatgaattctgtcatatttaattaatgtttagcAAAGATACATGTGGTTGCCAACAGCTATTGCTTAATCGACTTGTACAAGGTCTAatggatttataataaaaaaaagtcaaaacagTGAA

Function

GO: NA

KEGG:

id description
K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35847 lncRNA upstream 24024 43109050 ~ 43120781 (+) True G28637
TU35743 lncRNA upstream 522648 42621950 ~ 42622157 (+) True G28548
TU35721 lncRNA upstream 558137 42584232 ~ 42586668 (+) True G28527
TU35705 lncRNA upstream 643824 42500674 ~ 42500981 (+) True G28511
TU35677 lncRNA upstream 707577 42432836 ~ 42437228 (+) False AMCG00008102
TU35900 lncRNA downstream 21730 43177802 ~ 43201203 (+) True G28678
TU36139 lncRNA downstream 738037 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA downstream 738113 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA downstream 738113 43894185 ~ 43895128 (+) False G28862
TU36226 lncRNA downstream 897893 44053965 ~ 44056608 (+) True G28931
AMCG00008116 mRNA upstream 89120 43052668 ~ 43055685 (+) True AMCG00008116
AMCG00008119 mRNA upstream 126354 43012508 ~ 43018451 (+) True AMCG00008119
AMCG00008115 mRNA upstream 382260 42761526 ~ 42762545 (+) True AMCG00008115
AMCG00008111 mRNA upstream 431226 42704984 ~ 42713579 (+) True AMCG00008111
AMCG00008113 mRNA upstream 451946 42692026 ~ 42692859 (+) True AMCG00008113
AMCG00008121 mRNA downstream 3497 43159569 ~ 43175126 (+) True AMCG00008121
AMCG00008127 mRNA downstream 63027 43219099 ~ 43223126 (+) True AMCG00008127
AMCG00008130 mRNA downstream 76238 43232310 ~ 43251526 (+) True AMCG00008130
AMCG00008128 mRNA downstream 96525 43252597 ~ 43259195 (+) True AMCG00008128
AMCG00008132 mRNA downstream 136597 43292669 ~ 43305530 (+) True AMCG00008132
TU35844 other upstream 36563 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 1151428 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 2897567 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 3085419 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 3309869 39832389 ~ 39834936 (+) False AMCG00008020
TU35919 other downstream 136524 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 1867076 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 1993357 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 2184524 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 2284441 45440513 ~ 45441064 (+) True G29183

Expression Profile